Differential Expression

We currently have processed 129 comparisons for differentially expression genes based on our collected sets.


Column DEGs is stands for the total number of found Differentially Expression Genes in each comparison with the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5.


Click the number under column "Genes measured /analyzed" for browsing differential expression result for any comparison below.


Sample Set Citation Cell Type Timepoint Treatment NP Dose Control DEGs Genes measured /analyzed
1 E-GEOD-7010 Huang YC, Karol... primary airway epithelial cells 6h coarse PM (Chapel Hill) 250 µg/ml vehicle 0 11801
2 E-GEOD-7010 Huang YC, Karol... primary airway epithelial cells 6h fine PM (Chapel Hill) 250 µg/ml vehicle 5 11801
3 E-GEOD-7010 Huang YC, Karol... primary airway epithelial cells 6h ultrafine PM (Chapel Hill) 250 µg/ml vehicle 5 11801
4 E-TABM-679 A549 NA carbon black 66.5µg/cm2 none 2017 21897
5 E-TABM-679 A549 NA multiwall carbon nano tubes 133µg/cm2 none 1501 21897
6 E-TABM-679 A549 NA silica micro 133µg/cm2 none 975 21897
7 E-TABM-679 A549 NA silica nano 66.5µg/cm2 none 843 21897
8 E-TABM-679 A549 NA silica quartz 133µg/cm2 none 527 21897
9 GSE12405 Gras R, Almonac... Primary Macrophages 5h 2G-NN16 carbosilane dendrimer 5µM control 0 21031
10 GSE12405 Gras R, Almonac... Primary Macrophages 5h 2G-NN16 carbosilane dendrimer complexed with a random siRNA 5µM control 0 21031
11 GSE14452 Kawata K, Osawa... HepG2 24h Ag2CO3 1.3 mg/L control 760 7676
12 GSE14452 Kawata K, Osawa... HepG2 24h Ag-NP 1mg/L control 1176 7676
13 GSE14452 Kawata K, Osawa... HepG2 24h Ag-NP + cysteine 1mg/L Ag-NPs + 5mM N-acetyl-L-cysteine control 927 7676
14 GSE14452 Kawata K, Osawa... HepG2 24h PS-NP 1mg/L control 578 7676
15 GSE14910 Moos PJ, Olszew... RKO 4h Al2O3 50 µg/cm2 control (BSA pretreatment) 0 19774
16 GSE14910 Moos PJ, Olszew... RKO 4h carbon black 50 µg/cm2 control (BSA pretreatment) 0 19786
17 GSE14910 Moos PJ, Olszew... RKO 4h Fe2O3 10 µg/cm2 control (BSA pretreatment) 25 19833
18 GSE14910 Moos PJ, Olszew... RKO 4h micro ZnO 5 µg/cm2 control (BSA pretreatment) 340 19778
19 GSE14910 Moos PJ, Olszew... RKO 4h SiO2 50 µg/cm2 control (BSA pretreatment) 69 19904
20 GSE14910 Moos PJ, Olszew... RKO 4h TiO2 50 µg/cm2 control (BSA pretreatment) 197 19841
21 GSE14910 Moos PJ, Olszew... RKO 4h ZnO 5 µg/cm2 control (BSA pretreatment) 608 19798
22 GSE16425 Fujita K, Horie... HaCaT 2h TiO2(T-7) NA control 18 20443
23 GSE16425 Fujita K, Horie... HaCaT 2h TiO2(T-20) NA control 20 20443
24 GSE16425 Fujita K, Horie... HaCaT 2h TiO2(T-200) NA control 21 20443
25 GSE16425 Fujita K, Horie... HaCaT 6h TiO2(T-7) NA control 301 20443
26 GSE16425 Fujita K, Horie... HaCaT 6h TiO2(T-20) NA control 16 20443
27 GSE16425 Fujita K, Horie... HaCaT 6h TiO2(T-200) NA control 24 20443
28 GSE16425 Fujita K, Horie... HaCaT 24h TiO2(T-7) NA control 638 20443
29 GSE16425 Fujita K, Horie... HaCaT 24h TiO2(T-20) NA control 404 20443
30 GSE16425 Fujita K, Horie... HaCaT 24h TiO2(T-200) NA control 113 20443
31 GSE16727 Busch W, Kühne... HaCaT 3d CoCl2 - H2O control 2435 16368
32 GSE16727 Busch W, Kühne... HaCaT 3d WC-Co 33 µg/ml H2O control 91 16350
33 GSE16727 Busch W, Kühne... HaCaT 3d WC 30 µg/ml H2O control 0 16365
34 GSE16727 Busch W, Kühne... HaCaT 3h CoCl2 - H2O control 452 16414
35 GSE16727 Busch W, Kühne... HaCaT 3h WC-Co 33 µg/ml H2O control 10 16405
36 GSE16727 Busch W, Kühne... HaCaT 3h WC 30 µg/ml H2O control 2 16405
37 GSE20431 Balakumaran A, ... bone marrow stromal cell line See Balakumaran et al. FePro final 50:3µg/ml control 0 6692
38 GSE20431 Balakumaran A, ... bone marrow stromal cell line See Balakumaran et al. Gold nanoparticle 2.25 x 107 NP/ml control 0 6515
39 GSE20677 Kim EY, Schulz ... PBMC 24h AuNP EGFP oligonucleotide complex 10nM control 1710 18919
40 GSE20677 Kim EY, Schulz ... PBMC 48h AuNP EGFP oligonucleotide complex 10nM control 2219 18919
41 GSE25167 Moos PJ, Olszew... HaCaT 4h TiO2 10ug/cm2 control 1 21223
42 GSE25167 Moos PJ, Olszew... HaCaT 4h TiO2 5ug/cm2 control 2 21210
43 GSE25167 Moos PJ, Olszew... HaCaT 4h ZnCl2 100 µM control 43 21155
44 GSE25167 Moos PJ, Olszew... HaCaT 4h ZnO 1ug/cm2 control 28 21221
45 GSE25167 Moos PJ, Olszew... HaCaT 4h ZnO 5ug/cm2 control 0 21229
46 GSE33278 Hanagata N, Zhu... A549 24h CuO 25µg/ml control 2976 21346
47 GSE39316-HMDM Tuomela S, Auti... HMDM 24h TiO2 10µg/ml no treatment 0 17029
48 GSE39316-HMDM Tuomela S, Auti... HMDM 24h TiO2 1µg/ml no treatment 0 17029
49 GSE39316-HMDM Tuomela S, Auti... HMDM 6h TiO2 10µg/ml no treatment 0 17029
50 GSE39316-HMDM Tuomela S, Auti... HMDM 6h TiO2 1µg/ml no treatment 0 17029
51 GSE39316-HMDM Tuomela S, Auti... HMDM 24h ZnO 10µg/ml no treatment 1321 17029
52 GSE39316-HMDM Tuomela S, Auti... HMDM 24h ZnO 1µg/ml no treatment 0 17029
53 GSE39316-HMDM Tuomela S, Auti... HMDM 6h ZnO 10µg/ml no treatment 1049 17029
54 GSE39316-HMDM Tuomela S, Auti... HMDM 6h ZnO 1µg/ml no treatment 0 17029
55 GSE39316-Jurkat Tuomela S, Auti... Jurkat 24h TiO2 10µg/ml no treatment 0 17029
56 GSE39316-Jurkat Tuomela S, Auti... Jurkat 24h TiO2 1µg/ml no treatment 0 17029
57 GSE39316-Jurkat Tuomela S, Auti... Jurkat 6h TiO2 10µg/ml no treatment 0 17029
58 GSE39316-Jurkat Tuomela S, Auti... Jurkat 6h TiO2 1µg/ml no treatment 0 17029
59 GSE39316-Jurkat Tuomela S, Auti... Jurkat 24h ZnO 10µg/ml no treatment 89 17029
60 GSE39316-Jurkat Tuomela S, Auti... Jurkat 24h ZnO 1µg/ml no treatment 0 17029
61 GSE39316-Jurkat Tuomela S, Auti... Jurkat 6h ZnO 10µg/ml no treatment 422 17029
62 GSE39316-Jurkat Tuomela S, Auti... Jurkat 6h ZnO 1µg/ml no treatment 0 17029
63 GSE39316-MDDC Tuomela S, Auti... MDDC 24h TiO2 10µg/ml no treatment 0 17029
64 GSE39316-MDDC Tuomela S, Auti... MDDC 24h TiO2 1µg/ml no treatment 0 17029
65 GSE39316-MDDC Tuomela S, Auti... MDDC 6h TiO2 10µg/ml no treatment 0 17029
66 GSE39316-MDDC Tuomela S, Auti... MDDC 6h TiO2 1µg/ml no treatment 0 17029
67 GSE39316-MDDC Tuomela S, Auti... MDDC 24h ZnO 10µg/ml no treatment 9 17029
68 GSE39316-MDDC Tuomela S, Auti... MDDC 24h ZnO 1µg/ml no treatment 2 17029
69 GSE39316-MDDC Tuomela S, Auti... MDDC 6h ZnO 10µg/ml no treatment 9 17029
70 GSE39316-MDDC Tuomela S, Auti... MDDC 6h ZnO 1µg/ml no treatment 0 17029
71 GSE39330-HMDM Tuomela S, Auti... HMDM 24h ZnO 10µg/ml no treatment 2366 17617
72 GSE39330-HMDM Tuomela S, Auti... HMDM 6h ZnO 10µg/ml no treatment 2110 17617
73 GSE39330-Jurkat Tuomela S, Auti... Jurkat 24h ZnO 10µg/ml no treatment 195 17617
74 GSE39330-Jurkat Tuomela S, Auti... Jurkat 6h ZnO 10µg/ml no treatment 1288 17617
75 GSE39330-Jurkat_Dose Tuomela S, Auti... Jurkat 24h ZnO 10µg/ml no treatment 292 17617
76 GSE39330-Jurkat_Dose Tuomela S, Auti... Jurkat 24h ZnO 10µg/ml no treatment 3 17617
77 GSE39330-Jurkat_Dose Tuomela S, Auti... Jurkat 24h ZnO 10µg/ml no treatment 16 17617
78 GSE39330-Jurkat_Dose Tuomela S, Auti... Jurkat 24h ZnO 10µg/ml no treatment 3 17617
79 GSE39330-Jurkat_NPs Tuomela S, Auti... Jurkat 24h ZnO 100µg/ml no treatment 760 17617
80 GSE39330-Jurkat_NPs Tuomela S, Auti... Jurkat 24h ZnO 10µg/ml no treatment 3 17617
81 GSE39330-Jurkat_NPs Tuomela S, Auti... Jurkat 24h ZnO 25µg/ml no treatment 31 17617
82 GSE39330-Jurkat_NPs Tuomela S, Auti... Jurkat 24h ZnO 50µg/ml no treatment 59 17617
83 GSE39330-MDDC Tuomela S, Auti... MDDC 24h ZnO 10µg/ml no treatment 5 17617
84 GSE39330-MDDC Tuomela S, Auti... MDDC 6h ZnO 10µg/ml no treatment 5 17617
85 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 1h multi-walled carbon nanotubes (MWCNT) 100µg/ml control 12 11800
86 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 24h multi-walled carbon nanotubes (MWCNT) 100µg/ml control 0 11800
87 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 1h multi-walled carbon nanotubes (MWCNT) 10µg/ml control 13 11800
88 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 24h multi-walled carbon nanotubes (MWCNT) 10µg/ml control 0 11800
89 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 1h titanium nanobelts (TiO2-NB) 100µg/ml control 18 11800
90 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 24h titanium nanobelts (TiO2-NB) 100µg/ml control 16 11800
91 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 1h titanium nanobelts (TiO2-NB) 10µg/ml control 19 11800
92 GSE42066 Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) 24h titanium nanobelts (TiO2-NB) 10µg/ml control 1 11800
93 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 1h multi-walled carbon nanotubes (MWCNT) 100µg/ml control 49 11800
94 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 24h multi-walled carbon nanotubes (MWCNT) 100µg/ml control 0 11800
95 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 1h multi-walled carbon nanotubes (MWCNT) 10µg/ml control 1 11800
96 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 24h multi-walled carbon nanotubes (MWCNT) 10µg/ml control 0 11800
97 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 1h titanium nanobelts (TiO2-NB) 100µg/ml control 73 11800
98 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 24h titanium nanobelts (TiO2-NB) 100µg/ml control 9 11800
99 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 1h titanium nanobelts (TiO2-NB) 10µg/ml control 43 11800
100 GSE42067 Tilton SC, Kari... small airway epithelial (SAE) 24h titanium nanobelts (TiO2-NB) 10µg/ml control 0 11800
101 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 1h multi-walled carbon nanotubes (MWCNT) 100µg/ml control 0 11800
102 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 24h multi-walled carbon nanotubes (MWCNT) 100µg/ml control 336 11800
103 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 1h multi-walled carbon nanotubes (MWCNT) 10µg/ml control 0 11800
104 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 24h multi-walled carbon nanotubes (MWCNT) 10µg/ml control 0 11800
105 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 1h titanium nanobelts (TiO2-NB) 100µg/ml control 0 11800
106 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 24h titanium nanobelts (TiO2-NB) 100µg/ml control 498 11800
107 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 1h titanium nanobelts (TiO2-NB) 10µg/ml control 0 11800
108 GSE42068 Tilton SC, Kari... human acute monocytic leukemia (THP-1) 24h titanium nanobelts (TiO2-NB) 10µg/ml control 0 11800
109 GSE43515 lung fibroblasts (16lu) 24h CBNP w/o IL-13 10µg/cm2 vehicle control w/o IL-13 345 11800
110 GSE43515 lung fibroblasts (16lu) 24h CBNP with IL-13 10µg/cm2 vehicle control with IL-13 293 11800
111 GSE43515 lung fibroblasts (16lu) 48h CBNP w/o IL-13 10µg/cm2 vehicle control w/o IL-13 290 11800
112 GSE43515 lung fibroblasts (16lu) 48h CBNP with IL-13 10µg/cm2 vehicle control with IL-13 261 11800
113 GSE43515 lung fibroblasts (16lu) 4h CBNP w/o IL-13 10µg/cm2 vehicle control w/o IL-13 345 11800
114 GSE43515 lung fibroblasts (16lu) 4h CBNP with IL-13 10µg/cm2 vehicle control with IL-13 251 11800
115 GSE43515 lung fibroblasts (16lu) 24h MWCNT w/o IL-13 10µg/cm2 vehicle control w/o IL-13 599 11800
116 GSE43515 lung fibroblasts (16lu) 24h MWCNT with IL-13 10µg/cm2 vehicle control with IL-13 912 11800
117 GSE43515 lung fibroblasts (16lu) 48h MWCNT w/o IL-13 10µg/cm2 vehicle control w/o IL-13 651 11800
118 GSE43515 lung fibroblasts (16lu) 48h MWCNT with IL-13 10µg/cm2 vehicle control with IL-13 670 11800
119 GSE43515 lung fibroblasts (16lu) 4h MWCNT w/o IL-13 10µg/cm2 vehicle control w/o IL-13 770 11800
120 GSE43515 lung fibroblasts (16lu) 4h MWCNT with IL-13 10µg/cm2 vehicle control with IL-13 609 11800
121 GSE45322 hONS 2h ZnO nanoparticles (HP1) 25µg/ml none 41 22732
122 GSE45322 hONS 6h ZnO nanoparticles (HP1) 25µg/ml none 677 22732
123 GSE45322 hONS 2h ZnO nanoparticles (MAX) 25µg/ml none 10 22732
124 GSE45322 hONS 6h ZnO nanoparticles (MAX) 25µg/ml none 686 22732
125 GSE45322 hONS 2h ZnO nanoparticles (Nanosun) 25µg/ml none 52 22732
126 GSE45322 hONS 6h ZnO nanoparticles (Nanosun) 25µg/ml none 951 22732
127 GSE45322 hONS 2h ZnO nanoparticles (Z-COTE) 25µg/ml none 57 22732
128 GSE45322 hONS 6h ZnO nanoparticles (Z-COTE) 25µg/ml none 774 22732
129 GSE4567 Karoly ED, Li Z... pulmonary artery endothelial cell 4h ultrafine particle (Chapel Hill) 100µg/ml vehicle 65 18919