Differential expression result

The differential expression result was calculated using the comparison ultrafine_particulate_matter_vs_vehicle of data set E-GEOD-7010.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 5 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 591, showing 20 records out of 11801 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000198431 TXNRD1 -3.357e+0 9.609e+0 6.832e-3
2 ENSG00000100292 HMOX1 -5.611e+0 8.256e+0 6.832e-3
3 ENSG00000023909 GCLM -2.557e+0 8.573e+0 8.795e-3
4 ENSG00000151012 SLC7A11 -3.256e+0 7.232e+0 1.170e-2
5 ENSG00000125657 TNFSF9 -1.194e+0 7.705e+0 1.186e-2
6 ENSG00000197279 ZNF165 -1.079e+0 4.525e+0 7.089e-2
7 ENSG00000111802 TTRAP -1.419e+0 7.279e+0 7.089e-2
8 ENSG00000184916 JAG2 8.223e-1 7.882e+0 7.089e-2
9 ENSG00000170345 FOS 1.061e+0 6.464e+0 7.089e-2
10 ENSG00000143622 RIT1 -1.807e+0 6.384e+0 9.629e-2
11 ENSG00000132823 C20orf111 -5.852e-1 6.420e+0 1.216e-1
12 ENSG00000130164 LDLR -7.389e-1 9.434e+0 1.216e-1
13 ENSG00000166398 KIAA0355 -6.113e-1 6.223e+0 1.298e-1
14 ENSG00000117407 ARTN -7.517e-1 7.484e+0 1.561e-1
15 ENSG00000168575 SLC20A2 -8.356e-1 7.667e+0 1.594e-1
16 ENSG00000125144 MT1G -3.207e+0 9.620e+0 1.856e-1
17 ENSG00000001084 GCLC -1.892e+0 8.463e+0 1.922e-1
18 ENSG00000108179 PPIF -1.465e+0 9.309e+0 2.112e-1
19 ENSG00000146950 SHROOM2 1.117e+0 6.221e+0 2.282e-1
20 ENSG00000143995 MEIS1 8.006e-1 5.148e+0 3.359e-1
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 591, showing 20 records out of 11801 total, starting on record 1, ending on 20


Download full differential expression gene result:


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