Differential expression result

The differential expression result was calculated using the comparison carbon_black_vs_none of data set E-TABM-679.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 2017 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 1095, showing 20 records out of 21897 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000128564 VGF -2.521e+0 8.731e+0 7.850e-11
2 ENSG00000113739 STC2 -2.946e+0 1.055e+1 7.850e-11
3 ENSG00000168955 TM4SF20 2.501e+0 1.026e+1 8.487e-11
4 ENSG00000162545 CAMK2N1 2.498e+0 1.110e+1 1.094e-10
5 ENSG00000054598 FOXC1 3.542e+0 9.768e+0 1.195e-10
6 ENSG00000164171 ITGA2 1.976e+0 8.878e+0 1.195e-10
7 ENSG00000125968 ID1 1.836e+0 9.216e+0 1.535e-10
8 ENSG00000164120 HPGD 2.083e+0 9.114e+0 1.588e-10
9 ENSG00000132639 SNAP25 1.737e+0 8.581e+0 3.155e-10
10 ENSG00000125285 SOX21 2.179e+0 9.328e+0 3.155e-10
11 ENSG00000119729 RHOQ 1.668e+0 1.149e+1 3.796e-10
12 ENSG00000156510 HKDC1 -2.171e+0 1.133e+1 3.796e-10
13 ENSG00000103888 KIAA1199 3.113e+0 7.332e+0 4.242e-10
14 ENSG00000119138 KLF9 -1.801e+0 9.898e+0 4.242e-10
15 ENSG00000176153 GPX2 1.899e+0 1.373e+1 4.242e-10
16 ENSG00000187193 MT1X -1.841e+0 1.103e+1 4.242e-10
17 ENSG00000204257 HLA-DMA 1.842e+0 8.977e+0 4.242e-10
18 ENSG00000204258 HLA-DMB 1.842e+0 8.977e+0 4.242e-10
19 ENSG00000206293 HLA-DMA 1.842e+0 8.977e+0 4.242e-10
20 ENSG00000206294 HLA-DMB 1.842e+0 8.977e+0 4.242e-10
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 1095, showing 20 records out of 21897 total, starting on record 1, ending on 20


Download full differential expression gene result:


<< back to Main Comparsions List | << go to Search DEGs List