Differential expression result

The differential expression result was calculated using the comparison silica_nano_vs_none of data set E-TABM-679.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 843 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 1095, showing 20 records out of 21897 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000000003 TSPAN6 2.876e-1 9.771e+0 1.517e-2
2 ENSG00000000005 TNMD 1.027e-1 5.623e+0 7.001e-1
3 ENSG00000000419 DPM1 1.810e-1 1.173e+1 1.139e-1
4 ENSG00000000457 SCYL3 2.629e-2 6.543e+0 8.998e-1
5 ENSG00000000460 C1orf112 7.665e-2 8.844e+0 5.832e-1
6 ENSG00000000938 FGR 2.797e-1 5.440e+0 7.531e-2
7 ENSG00000000971 CFH -3.165e-1 7.029e+0 1.849e-2
8 ENSG00000001036 FUCA2 -2.729e-1 7.224e+0 3.765e-2
9 ENSG00000001084 GCLC 5.812e-2 9.145e+0 6.759e-1
10 ENSG00000001167 NFYA 1.867e-1 6.366e+0 4.398e-1
11 ENSG00000001460 C1orf201 -9.820e-2 5.041e+0 7.983e-1
12 ENSG00000001461 NPAL3 -3.140e-1 8.188e+0 9.052e-3
13 ENSG00000001497 LAS1L -1.204e-1 9.629e+0 3.365e-1
14 ENSG00000001561 ENPP4 2.376e-1 6.681e+0 2.693e-1
15 ENSG00000001617 SEMA3F -2.629e-2 5.743e+0 9.366e-1
16 ENSG00000001626 CFTR -2.705e-1 5.541e+0 2.936e-1
17 ENSG00000001630 CYP51A1 5.774e-1 7.236e+0 8.235e-3
18 ENSG00000001631 KRIT1 -2.650e-1 7.346e+0 1.596e-2
19 ENSG00000002016 RAD52 1.880e-1 5.549e+0 2.609e-1
20 ENSG00000002079 MYH16 -6.734e-3 5.452e+0 9.780e-1
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Page 1 of 1095, showing 20 records out of 21897 total, starting on record 1, ending on 20


Download full differential expression gene result:


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