Differential expression result

The differential expression result was calculated using the comparison Ag_NPs_vs_control of data set GSE14452.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 1176 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 384, showing 20 records out of 7676 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000171345 KRT19 -2.990e+0 9.630e+0 1.722e-9
2 ENSG00000165507 C10orf10 2.986e+0 8.305e+0 1.722e-9
3 ENSG00000070669 ASNS 3.148e+0 8.636e+0 1.722e-9
4 ENSG00000135919 SERPINE2 -2.519e+0 7.954e+0 1.722e-9
5 ENSG00000171848 RRM2 -2.230e+0 9.950e+0 5.344e-9
6 ENSG00000112337 SLC17A2 2.652e+0 7.557e+0 5.344e-9
7 ENSG00000105398 SULT2A1 2.394e+0 8.224e+0 5.344e-9
8 ENSG00000116761 CTH 2.621e+0 7.214e+0 5.344e-9
9 ENSG00000175183 CSRP2 -2.090e+0 7.307e+0 5.344e-9
10 ENSG00000179218 CALR -2.357e+0 8.803e+0 5.344e-9
11 ENSG00000175793 SFN -2.186e+0 9.921e+0 5.619e-9
12 ENSG00000115009 CCL20 2.435e+0 1.051e+1 6.347e-9
13 ENSG00000091138 SLC26A3 2.775e+0 4.200e+0 7.384e-9
14 ENSG00000156096 UGT2B4 2.651e+0 5.266e+0 7.384e-9
15 ENSG00000198805 NP -1.937e+0 7.989e+0 9.846e-9
16 ENSG00000102265 TIMP1 -2.050e+0 8.370e+0 9.846e-9
17 ENSG00000151012 SLC7A11 2.307e+0 8.643e+0 1.026e-8
18 ENSG00000196754 S100A2 -2.270e+0 6.070e+0 1.043e-8
19 ENSG00000114115 RBP1 -2.174e+0 6.970e+0 1.043e-8
20 ENSG00000134352 IL6ST 2.049e+0 5.977e+0 1.213e-8
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 384, showing 20 records out of 7676 total, starting on record 1, ending on 20


Download full differential expression gene result:


<< back to Main Comparsions List | << go to Search DEGs List