Differential expression result

The differential expression result was calculated using the comparison SiO2_BSA_TNF of data set GSE14910.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 69 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 996, showing 20 records out of 19904 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000128383 APOBEC3A 1.733e-1 2.279e-1
2 ENSG00000160716 CHRNB2 3.577e-2 6.896e-1
3 ENSG00000058063 ATP11B -9.812e-2 2.922e-1
4 ENSG00000184508 HDDC3 -1.494e-1 2.503e-1
5 ENSG00000171867 PRNP 2.398e-1 1.943e-1
6 ENSG00000232931 -1.164e-1 3.302e-1
7 ENSG00000259316 8.815e-2 3.957e-1
8 ENSG00000205730 ITPRIPL2 2.234e-1 8.927e-2
9 ENSG00000263138 -1.234e-2 9.119e-1
10 ENSG00000011132 APBA3 1.541e-1 3.619e-1
11 ENSG00000249319 -1.924e-2 8.391e-1
12 ENSG00000099338 C19orf15 -5.470e-3 9.600e-1
13 ENSG00000123444 KBTBD4 -3.324e-2 7.385e-1
14 ENSG00000249138 1.110e-1 4.339e-1
15 ENSG00000123384 LRP1 7.824e-3 9.358e-1
16 ENSG00000165699 TSC1 -1.117e-1 2.325e-1
17 ENSG00000238222 8.034e-2 3.308e-1
18 ENSG00000121933 ADORA3 4.707e-2 5.985e-1
19 ENSG00000090615 GOLGA3 -2.491e-2 7.802e-1
20 ENSG00000113361 CDH6 9.561e-3 9.185e-1
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 996, showing 20 records out of 19904 total, starting on record 1, ending on 20


Download full differential expression gene result:


<< back to Main Comparsions List | << go to Search DEGs List