Differential expression result

The differential expression result was calculated using the comparison TiO2_BSA_TNF of data set GSE14910.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 197 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 2 of 993, showing 20 records out of 19841 total, starting on record 21, ending on 40.


First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000102181 CD99L2 1.927e-2 8.704e-1
2 ENSG00000116698 SMG7 2.968e-1 3.168e-2
3 ENSG00000066697 C9orf30 -1.587e-2 9.207e-1
4 ENSG00000147231 CXorf57 5.847e-2 5.193e-1
5 ENSG00000071246 VASH1 -7.911e-2 3.647e-1
6 ENSG00000112658 SRF 2.110e-1 6.758e-2
7 ENSG00000140022 STON2 1.295e-1 2.283e-1
8 ENSG00000253652 -4.690e-2 6.992e-1
9 ENSG00000114439 BBX -1.100e-1 4.880e-1
10 ENSG00000139514 SLC7A1 2.851e-1 4.448e-2
11 ENSG00000181541 MAB21L2 1.389e-1 3.085e-1
12 ENSG00000166707 ZCCHC18 -4.097e-2 7.045e-1
13 ENSG00000142627 EPHA2 8.044e-1 2.182e-2
14 ENSG00000143858 SYT2 1.556e-1 1.070e-1
15 ENSG00000109084 TMEM97 -7.691e-2 6.304e-1
16 ENSG00000137266 SLC22A23 7.878e-2 3.725e-1
17 ENSG00000238022 1.087e-2 9.222e-1
18 ENSG00000119335 SET 2.873e-4 9.980e-1
19 ENSG00000204335 SP5 3.480e-1 1.587e-1
20 ENSG00000111537 IFNG 2.163e-2 8.208e-1
First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 2 of 993, showing 20 records out of 19841 total, starting on record 21, ending on 40


Download full differential expression gene result:


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