Differential expression result

The differential expression result was calculated using the comparison TiO2_BSA_TNF of data set GSE14910.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 197 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 3 of 993, showing 20 records out of 19841 total, starting on record 41, ending on 60.


First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000003147 ICA1 -9.731e-2 3.028e-1
2 ENSG00000177409 SAMD9L 2.662e-1 4.116e-1
3 ENSG00000196341 OR8D1 2.110e-2 8.545e-1
4 ENSG00000176720 BOK 4.779e-1 3.332e-2
5 ENSG00000185127 C6orf120 2.134e-1 7.349e-2
6 ENSG00000073536 NLE1 1.289e-1 2.331e-1
7 ENSG00000078140 UBE2K 1.633e-1 8.935e-2
8 ENSG00000162817 C1orf115 1.526e-1 1.584e-1
9 ENSG00000143882 ATP6V1C2 -1.636e-1 3.902e-1
10 ENSG00000129535 NRL -4.560e-3 9.631e-1
11 ENSG00000169925 BRD3 1.528e-2 8.959e-1
12 ENSG00000163626 COX18 -1.298e-1 2.237e-1
13 ENSG00000165409 TSHR 3.647e-2 7.628e-1
14 ENSG00000168787 OR12D2 1.541e-1 1.687e-1
15 ENSG00000197324 LRP10 2.538e-1 4.238e-2
16 ENSG00000126460 PRRG2 1.311e-2 9.409e-1
17 ENSG00000100678 SLC8A3 -7.976e-2 5.474e-1
18 ENSG00000165474 GJB2 1.249e-1 6.469e-1
19 ENSG00000244558 1.248e-1 1.931e-1
20 ENSG00000186143 C2orf53 -4.240e-2 6.246e-1
First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 3 of 993, showing 20 records out of 19841 total, starting on record 41, ending on 60


Download full differential expression gene result:


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