Differential expression result

The differential expression result was calculated using the comparison TiO2_BSA_TNF of data set GSE14910.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 197 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 6 of 993, showing 20 records out of 19841 total, starting on record 101, ending on 120.


First| | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000088340 FER1L4 5.250e-2 5.186e-1
2 ENSG00000144821 MYH15 -5.079e-2 6.890e-1
3 ENSG00000134852 CLOCK 2.122e-1 1.894e-1
4 ENSG00000214265 SNURF 1.984e-2 8.470e-1
5 ENSG00000250536 5.464e-2 4.960e-1
6 ENSG00000186188 GPR120 3.757e-1 8.538e-2
7 ENSG00000106392 C1GALT1 4.773e-2 7.716e-1
8 ENSG00000152503 TRIM36 1.265e-2 9.627e-1
9 ENSG00000081041 CXCL2 1.133e+0 8.693e-2
10 ENSG00000116497 S100PBP -3.214e-1 1.054e-1
11 ENSG00000188312 CENPP -2.039e-1 1.765e-1
12 ENSG00000229048 4.565e-2 6.223e-1
13 ENSG00000224281 2.450e-1 8.255e-2
14 ENSG00000132405 TBC1D14 6.086e-2 6.744e-1
15 ENSG00000158477 CD1A 1.255e-2 8.967e-1
16 ENSG00000137522 RNF121 1.606e-2 8.961e-1
17 ENSG00000112308 C6orf62 7.949e-2 4.989e-1
18 ENSG00000237515 -1.373e-1 3.353e-1
19 ENSG00000119812 FAM98A 6.624e-2 4.428e-1
20 ENSG00000104825 NFKBIB 3.268e-1 1.884e-1
First| | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | | Last



Page 6 of 993, showing 20 records out of 19841 total, starting on record 101, ending on 120


Download full differential expression gene result:


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