Differential expression result

The differential expression result was calculated using the comparison TiO2_BSA_TNF of data set GSE14910.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 197 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 7 of 993, showing 20 records out of 19841 total, starting on record 121, ending on 140.


First| | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000154380 ENAH -2.620e-1 1.013e-1
2 ENSG00000183578 TNFAIP8L3 1.817e-1 9.625e-2
3 ENSG00000233974 4.142e-2 6.400e-1
4 ENSG00000157551 KCNJ15 5.081e-2 7.052e-1
5 ENSG00000141371 C17orf64 -1.245e-1 3.094e-1
6 ENSG00000136573 BLK -1.897e-2 8.714e-1
7 ENSG00000172000 ZNF556 -5.315e-2 8.377e-1
8 ENSG00000131408 NR1H2 9.680e-2 2.780e-1
9 ENSG00000012983 MAP4K5 3.556e-2 7.136e-1
10 ENSG00000171953 ATPAF2 5.785e-2 5.136e-1
11 ENSG00000074211 PPP2R2C -1.767e-2 8.549e-1
12 ENSG00000179299 NSUN7 -1.795e-1 1.979e-1
13 ENSG00000127616 SMARCA4 2.182e-1 1.063e-1
14 ENSG00000149313 AASDHPPT -2.613e-1 4.413e-2
15 ENSG00000109133 TMEM33 1.722e-1 1.512e-1
16 ENSG00000258518 -1.258e-1 1.537e-1
17 ENSG00000172534 HCFC1 3.632e-1 2.214e-2
18 ENSG00000146555 SDK1 -4.187e-2 6.391e-1
19 ENSG00000134460 IL2RA 3.412e-2 7.231e-1
20 ENSG00000100083 GGA1 -1.855e-1 1.738e-1
First| | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | | Last



Page 7 of 993, showing 20 records out of 19841 total, starting on record 121, ending on 140


Download full differential expression gene result:


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