Differential expression result

The differential expression result was calculated using the comparison TiO2_BSA_TNF of data set GSE14910.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 197 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 8 of 993, showing 20 records out of 19841 total, starting on record 141, ending on 160.


First| | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000169967 MAP3K2 1.851e-1 9.425e-2
2 ENSG00000165169 DYNLT3 2.940e-2 8.274e-1
3 ENSG00000111605 CPSF6 -1.134e-2 9.306e-1
4 ENSG00000228451 7.298e-2 4.601e-1
5 ENSG00000100479 POLE2 -1.643e-1 1.276e-1
6 ENSG00000139567 ACVRL1 8.040e-2 5.124e-1
7 ENSG00000128594 LRRC4 -2.344e-1 1.070e-1
8 ENSG00000110092 CCND1 2.358e-1 5.991e-2
9 ENSG00000152700 SAR1B -2.606e-1 1.293e-1
10 ENSG00000105248 CCDC94 1.057e-1 3.091e-1
11 ENSG00000229547 -1.937e-2 8.336e-1
12 ENSG00000198685 C3orf27 -4.301e-2 6.714e-1
13 ENSG00000164144 ARFIP1 -4.552e-2 6.124e-1
14 ENSG00000139618 BRCA2 -7.055e-2 3.784e-1
15 ENSG00000119242 CCDC92 2.313e-1 5.800e-2
16 ENSG00000261378 2.637e-1 4.337e-2
17 ENSG00000197889 MEIG1 -1.792e-1 2.406e-1
18 ENSG00000196588 MKL1 3.618e-1 2.288e-2
19 ENSG00000166451 CENPN -1.603e-1 4.020e-1
20 ENSG00000230148 -4.516e-1 4.837e-2
First| | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | | Last



Page 8 of 993, showing 20 records out of 19841 total, starting on record 141, ending on 160


Download full differential expression gene result:


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