Differential expression result

The differential expression result was calculated using the comparison TiO2_BSA_TNF of data set GSE14910.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 197 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 9 of 993, showing 20 records out of 19841 total, starting on record 161, ending on 180.


First| | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000153207 AHCTF1 1.288e-1 5.281e-1
2 ENSG00000139648 KRT71 -3.938e-3 9.786e-1
3 ENSG00000087495 PHACTR3 3.072e-1 1.069e-1
4 ENSG00000131007 TTTY9B 9.269e-2 3.094e-1
5 ENSG00000077150 NFKB2 7.773e-1 6.833e-2
6 ENSG00000242732 -1.437e-1 3.292e-1
7 ENSG00000126391 FRMD8 8.520e-2 2.999e-1
8 ENSG00000143727 ACP1 -1.006e-1 3.411e-1
9 ENSG00000180370 PAK2 1.072e-1 2.537e-1
10 ENSG00000159423 ALDH4A1 3.003e-2 7.315e-1
11 ENSG00000163444 TMEM183A -1.889e-1 9.317e-2
12 ENSG00000101746 NOL4 -1.212e-3 9.932e-1
13 ENSG00000110429 FBXO3 -1.159e-1 1.879e-1
14 ENSG00000174276 ZNHIT2 7.529e-3 9.561e-1
15 ENSG00000182613 OR2V2 -1.979e-2 8.975e-1
16 ENSG00000142408 CACNG8 1.035e-1 2.752e-1
17 ENSG00000187288 CIDEC 3.391e-1 3.168e-2
18 ENSG00000166770 -2.019e-1 1.782e-1
19 ENSG00000196456 ZNF775 1.126e-1 1.825e-1
20 ENSG00000243008 -1.802e-1 1.546e-1
First| | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | | Last



Page 9 of 993, showing 20 records out of 19841 total, starting on record 161, ending on 180


Download full differential expression gene result:


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