Differential expression result

The differential expression result was calculated using the comparison Treat06hST21_1G_vs_Treat06hCon of data set GSE16425.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 16 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 1023, showing 20 records out of 20443 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000237456 -1.918e+0 2.521e-8
2 ENSG00000115738 ID2 -1.567e+0 1.870e-7
3 ENSG00000164400 CSF2 1.276e+0 1.365e-6
4 ENSG00000172201 ID4 -1.453e+0 7.601e-6
5 ENSG00000115844 DLX2 -5.811e-1 3.454e-5
6 ENSG00000087494 PTHLH -7.384e-1 1.917e-4
7 ENSG00000164292 RHOBTB3 -5.626e-1 2.441e-3
8 ENSG00000124225 PMEPA1 -6.971e-1 2.441e-3
9 ENSG00000117318 ID3 -1.119e+0 4.690e-3
10 ENSG00000138166 DUSP 6.669e-1 6.808e-3
11 ENSG00000162552 WNT4 5.034e-1 7.110e-3
12 ENSG00000164683 HEY1 -5.133e-1 7.151e-3
13 ENSG00000163545 NUAK2 3.070e-1 8.046e-3
14 ENSG00000141738 GRB7 5.885e-1 8.557e-3
15 ENSG00000249007 9.137e-1 1.076e-2
16 ENSG00000113070 HBEGF 5.858e-1 1.089e-2
17 ENSG00000108946 PRKAR1A 5.375e-1 1.231e-2
18 ENSG00000143507 DUSP10 -4.230e-1 1.231e-2
19 ENSG00000169252 ADRB2 3.924e-1 1.400e-2
20 ENSG00000007545 CRAMP1L -9.845e-1 1.400e-2
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Page 1 of 1023, showing 20 records out of 20443 total, starting on record 1, ending on 20


Download full differential expression gene result:


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