Differential expression result

The differential expression result was calculated using the comparison Treat06hST41_05G_vs_Treat06hCon of data set GSE16425.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 24 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 1023, showing 20 records out of 20443 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000164400 CSF2 1.587e+0 4.057e-8
2 ENSG00000138166 DUSP 9.138e-1 1.146e-4
3 ENSG00000237456 -1.212e+0 1.146e-4
4 ENSG00000157111 TMEM171 8.403e-1 3.103e-4
5 ENSG00000119986 AVPI1 -6.661e-1 4.667e-4
6 ENSG00000115738 ID2 -9.788e-1 4.667e-4
7 ENSG00000036530 CYP46A1 6.198e-1 1.046e-3
8 ENSG00000113070 HBEGF 6.837e-1 1.949e-3
9 ENSG00000172201 ID4 -1.019e+0 1.949e-3
10 ENSG00000078401 EDN1 5.926e-1 2.991e-3
11 ENSG00000179674 ARL14 -6.917e-1 2.991e-3
12 ENSG00000115844 DLX2 -4.230e-1 3.212e-3
13 ENSG00000172379 ARNT2 -6.382e-1 3.212e-3
14 ENSG00000116285 ERRFI1 5.976e-1 3.738e-3
15 ENSG00000227540 -4.302e-1 4.603e-3
16 ENSG00000125910 S1PR4 -3.832e-1 4.603e-3
17 ENSG00000088826 SMOX -8.278e-1 4.603e-3
18 ENSG00000185670 ZBTB3 -4.106e-1 4.603e-3
19 ENSG00000050820 BCAR1 4.134e-1 8.678e-3
20 ENSG00000169252 ADRB2 3.935e-1 1.228e-2
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Page 1 of 1023, showing 20 records out of 20443 total, starting on record 1, ending on 20


Download full differential expression gene result:


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