Differential expression result

The differential expression result was calculated using the comparison Treat24hST21_1G_vs_Treat24hCon of data set GSE16425.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 404 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 1023, showing 20 records out of 20443 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000164292 RHOBTB3 -1.259e+0 2.424e-9
2 ENSG00000172201 ID4 -1.996e+0 1.460e-8
3 ENSG00000121853 GHSR 1.566e+0 1.460e-8
4 ENSG00000115844 DLX2 -8.032e-1 4.775e-8
5 ENSG00000169992 NLGN2 7.865e-1 4.775e-8
6 ENSG00000213686 1.148e+0 4.775e-8
7 ENSG00000237456 -1.550e+0 4.775e-8
8 ENSG00000103313 MEFV 9.277e-1 1.252e-7
9 ENSG00000078401 EDN1 1.016e+0 1.661e-7
10 ENSG00000233251 8.413e-1 2.112e-7
11 ENSG00000169618 PROKR1 1.112e+0 2.112e-7
12 ENSG00000177984 LCN15 7.671e-1 2.591e-7
13 ENSG00000257008 1.145e+0 2.591e-7
14 ENSG00000133874 RNF122 9.047e-1 4.383e-7
15 ENSG00000197921 HES5 -1.193e+0 6.126e-7
16 ENSG00000164683 HEY1 -8.516e-1 7.268e-7
17 ENSG00000115738 ID2 -1.438e+0 7.476e-7
18 ENSG00000232767 8.677e-1 7.993e-7
19 ENSG00000163207 IVL -1.164e+0 9.359e-7
20 ENSG00000196408 NOXO1 1.011e+0 1.135e-6
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Page 1 of 1023, showing 20 records out of 20443 total, starting on record 1, ending on 20


Download full differential expression gene result:


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