Differential expression result

The differential expression result was calculated using the comparison 3d_WC_Co_vs_control of data set GSE16727.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 91 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 818, showing 20 records out of 16350 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000107159 CA9 -3.379e+0 1.076e-5
2 ENSG00000134013 LOXL2 -3.634e+0 1.591e-5
3 ENSG00000152256 PDK1 -2.051e+0 1.591e-5
4 ENSG00000143847 PPFIA4 -2.102e+0 3.550e-5
5 ENSG00000111674 ENO2 -2.022e+0 4.163e-5
6 ENSG00000114480 GBE1 -1.490e+0 4.163e-5
7 ENSG00000196968 FUT11 -1.908e+0 4.595e-5
8 ENSG00000181458 TMEM45A -1.714e+0 1.624e-4
9 ENSG00000176171 BNIP3 -3.939e+0 1.432e-4
10 ENSG00000135766 EGLN1 -1.039e+0 1.762e-4
11 ENSG00000114268 PFKFB4 -2.017e+0 2.561e-4
12 ENSG00000170379 FAM115C -1.117e+0 2.561e-4
13 ENSG00000130821 SLC6A8 -1.098e+0 2.706e-4
14 ENSG00000116260 QSOX1 -1.344e+0 2.794e-4
15 ENSG00000109107 ALDOC -1.902e+0 3.676e-4
16 ENSG00000172005 MAL 2.182e+0 4.456e-4
17 ENSG00000102144 PGK1 -1.443e+0 5.089e-4
18 ENSG00000177606 JUN -1.384e+0 5.217e-4
19 ENSG00000167772 ANGPTL4 -3.280e+0 5.089e-4
20 ENSG00000167397 VKORC1 -8.798e-1 1.085e-3
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Page 1 of 818, showing 20 records out of 16350 total, starting on record 1, ending on 20


Download full differential expression gene result:


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