Differential expression result

The differential expression result was calculated using the comparison 3d_WC_vs_control of data set GSE16727.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 0 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 819, showing 20 records out of 16365 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000196968 FUT11 -4.874e-1 7.407e-1
2 ENSG00000176171 BNIP3 -1.786e+0 3.875e-1
3 ENSG00000152256 PDK1 -7.419e-1 7.686e-1
4 ENSG00000107159 CA9 -1.364e+0 7.686e-1
5 ENSG00000135766 EGLN1 -4.182e-1 9.999e-1
6 ENSG00000172005 MAL 1.219e+0 9.999e-1
7 ENSG00000176194 CIDEA -3.335e-1 9.999e-1
8 ENSG00000134333 LDHA -1.022e+0 9.999e-1
9 ENSG00000147614 ATP6V0D2 3.455e-1 9.999e-1
10 ENSG00000164825 DEFB1 1.098e+0 9.999e-1
11 ENSG00000176988 FMR1NB 2.622e-1 9.999e-1
12 ENSG00000134013 LOXL2 -1.193e+0 9.999e-1
13 ENSG00000196365 LONP1 -5.333e-1 9.999e-1
14 ENSG00000145088 EAF2 4.964e-1 9.999e-1
15 ENSG00000068489 PRR11 -4.832e-1 9.999e-1
16 ENSG00000174173 RG9MTD1 2.786e-1 9.999e-1
17 ENSG00000104765 BNIP3L -4.952e-1 9.999e-1
18 ENSG00000147592 LACTB2 4.337e-1 9.999e-1
19 ENSG00000143847 PPFIA4 -5.809e-1 9.999e-1
20 ENSG00000169857 AVEN -3.460e-1 9.999e-1
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Page 1 of 819, showing 20 records out of 16365 total, starting on record 1, ending on 20


Download full differential expression gene result:


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