Differential expression result

The differential expression result was calculated using the comparison 3h_CoCl_vs_control of data set GSE16727.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 452 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 821, showing 20 records out of 16414 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000184840 TMED9 2.961e+0 1.953e-7
2 ENSG00000100628 ASB2 -1.682e+0 8.471e-5
3 ENSG00000148926 ADM -1.316e+0 1.233e-4
4 ENSG00000156697 UTP14A 8.431e-1 1.233e-4
5 ENSG00000170385 SLC30A1 1.048e+0 1.233e-4
6 ENSG00000186352 ANKRD37 -2.293e+0 1.233e-4
7 ENSG00000140263 SORD 1.013e+0 1.580e-4
8 ENSG00000135245 C7orf68 -1.446e+0 1.580e-4
9 ENSG00000126767 ELK1 9.293e-1 1.847e-4
10 ENSG00000167772 ANGPTL4 -3.104e+0 2.625e-4
11 ENSG00000127080 IPPK -8.999e-1 2.625e-4
12 ENSG00000172977 KAT5 6.690e-1 3.183e-4
13 ENSG00000087152 ATXN7L3 8.453e-1 3.187e-4
14 ENSG00000107833 NPM3 1.334e+0 3.292e-4
15 ENSG00000133874 RNF122 -1.075e+0 3.292e-4
16 ENSG00000120853 GOLGA2L1 6.541e-1 3.843e-4
17 ENSG00000112787 FBRSL1 -8.202e-1 4.638e-4
18 ENSG00000170465 KRT6C 1.093e+0 4.676e-4
19 ENSG00000169035 KLK7 1.252e+0 5.457e-4
20 ENSG00000117394 SLC2A1 -1.053e+0 5.839e-4
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Page 1 of 821, showing 20 records out of 16414 total, starting on record 1, ending on 20


Download full differential expression gene result:


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