Differential expression result

The differential expression result was calculated using the comparison 3h_WC_Co_vs_control of data set GSE16727.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 10 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 821, showing 20 records out of 16405 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000167772 ANGPTL4 -2.412e+0 1.318e-3
2 ENSG00000115738 ID2 1.086e+0 2.661e-3
3 ENSG00000148926 ADM -1.106e+0 2.661e-3
4 ENSG00000186352 ANKRD37 -2.036e+0 2.661e-3
5 ENSG00000114268 PFKFB4 -5.243e-1 5.372e-3
6 ENSG00000123364 HOXC13 8.356e-1 4.878e-3
7 ENSG00000109046 WSB1 -8.316e-1 7.915e-3
8 ENSG00000135245 C7orf68 -9.559e-1 1.089e-2
9 ENSG00000115548 JMJD1A -1.088e+0 1.382e-2
10 ENSG00000127129 EDN2 -9.667e-1 1.382e-2
11 ENSG00000100628 ASB2 -1.062e+0 1.382e-2
12 ENSG00000130513 GDF15 -9.839e-1 5.569e-2
13 ENSG00000170525 PFKFB3 -4.454e-1 6.870e-2
14 ENSG00000188994 ZNF292 -5.323e-1 8.575e-2
15 ENSG00000163545 NUAK2 -5.580e-1 8.744e-2
16 ENSG00000213859 KCTD11 -6.799e-1 8.769e-2
17 ENSG00000135766 EGLN1 -5.028e-1 8.769e-2
18 ENSG00000137547 MRPL15 4.587e-1 1.039e-1
19 ENSG00000144655 AXUD1 -4.226e-1 1.039e-1
20 ENSG00000139832 RAB20 -7.881e-1 1.039e-1
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Page 1 of 821, showing 20 records out of 16405 total, starting on record 1, ending on 20


Download full differential expression gene result:


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