Differential expression result

The differential expression result was calculated using the comparison 3h_WC_vs_control of data set GSE16727.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 2 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 821, showing 20 records out of 16405 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000123364 HOXC13 8.205e-1 9.171e-4
2 ENSG00000115738 ID2 1.235e+0 1.492e-3
3 ENSG00000117318 ID3 5.618e-1 1.017e-1
4 ENSG00000125968 ID1 9.739e-1 1.156e-1
5 ENSG00000137834 SMAD6 3.029e-1 9.983e-1
6 ENSG00000130513 GDF15 -4.471e-1 8.994e-1
7 ENSG00000155714 C16orf65 3.058e-1 9.998e-1
8 ENSG00000176635 HORMAD2 -3.664e-1 9.998e-1
9 ENSG00000101665 SMAD7 2.603e-1 9.998e-1
10 ENSG00000184432 COPB2 2.798e-1 9.998e-1
11 ENSG00000198948 MFAP3L -2.578e-1 9.998e-1
12 ENSG00000170948 MBD3L1 -2.328e-1 9.998e-1
13 ENSG00000152595 MEPE 2.298e-1 9.998e-1
14 ENSG00000143507 DUSP10 2.672e-1 9.998e-1
15 ENSG00000122679 RAMP3 -2.250e-1 9.998e-1
16 ENSG00000099282 TSPAN15 2.707e-1 9.998e-1
17 ENSG00000166886 NAB2 2.345e-1 9.998e-1
18 ENSG00000197921 HES5 5.661e-1 9.998e-1
19 ENSG00000135241 PNPLA8 2.228e-1 9.998e-1
20 ENSG00000187323 DCC -2.299e-1 9.998e-1
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Page 1 of 821, showing 20 records out of 16405 total, starting on record 1, ending on 20


Download full differential expression gene result:


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