Differential expression result

The differential expression result was calculated using the comparison CuOnano_25ug_vs_control of data set GSE33278.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 2976 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 1068, showing 20 records out of 21346 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change Adj_P_Value
1 ENSG00000205189 ZBTB10 -2.723e-1 9.206e-2
2 ENSG00000074319 TSG101 -1.639e-1 3.371e-1
3 ENSG00000198513 SPG3A 6.567e-1 8.037e-2
4 ENSG00000107819 SFXN3 3.116e-1 5.126e-2
5 ENSG00000110025 SNX15 -7.210e-2 6.050e-1
6 ENSG00000177000 MTHFR -1.613e-1 3.120e-1
7 ENSG00000149823 C11orf2 -7.810e-2 7.126e-1
8 ENSG00000121933 ADORA3 -1.264e-1 3.273e-1
9 ENSG00000233122 -5.009e-2 7.247e-1
10 ENSG00000178171 FAM123C -2.827e-1 2.105e-1
11 ENSG00000260371 2.677e-1 8.125e-2
12 ENSG00000229507 3.905e-2 7.869e-1
13 ENSG00000157445 CACNA2D3 3.321e-2 8.673e-1
14 ENSG00000153404 PLEKHG4B -1.844e-1 3.981e-1
15 ENSG00000124493 GRM4 -9.129e-2 6.709e-1
16 ENSG00000157017 GHRL 1.745e-1 2.026e-1
17 ENSG00000119402 FBXW2 4.052e-1 1.606e-2
18 ENSG00000197275 RAD54B 3.523e-1 1.804e-2
19 ENSG00000183569 SERHL2 1.634e-1 4.369e-1
20 ENSG00000099804 CDC34 -3.344e-1 4.737e-2
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Page 1 of 1068, showing 20 records out of 21346 total, starting on record 1, ending on 20


Download full differential expression gene result:


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