Differential expression result

The differential expression result was calculated using the comparison HMDM_TiO24h10_notreatment24h0 of data set GSE39316-HMDM.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 0 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000137673 MMP7 6.333e-1 8.818e+0 7.969e-1
2 ENSG00000204427 BAT5 -3.685e-1 9.466e+0 7.969e-1
3 ENSG00000168765 GSTM4 3.322e-1 7.521e+0 7.969e-1
4 ENSG00000136231 IGF2BP3 2.826e-1 7.614e+0 7.969e-1
5 ENSG00000101152 DNAJC5 2.824e-1 9.155e+0 7.969e-1
6 ENSG00000177084 POLE -3.204e-1 7.996e+0 7.969e-1
7 ENSG00000169605 GKN1 -1.428e-1 7.251e+0 7.969e-1
8 ENSG00000177854 TMEM187 3.738e-1 8.557e+0 7.969e-1
9 ENSG00000213578 CPLX3 -1.113e-1 7.216e+0 7.969e-1
10 ENSG00000203710 CR1 3.248e-1 7.602e+0 7.969e-1
11 ENSG00000204161 C10orf128 3.776e-1 7.669e+0 7.969e-1
12 ENSG00000107537 PHYH 3.197e-1 8.102e+0 7.969e-1
13 ENSG00000153250 RBMS1 2.922e-1 8.820e+0 7.969e-1
14 ENSG00000011260 UTP18 2.963e-1 8.282e+0 7.969e-1
15 ENSG00000110583 NAT11 -1.993e-1 7.548e+0 7.969e-1
16 ENSG00000148660 CAMK2G -2.406e-1 8.048e+0 7.969e-1
17 ENSG00000124422 USP22 1.203e+0 8.212e+0 7.969e-1
18 ENSG00000179152 C3orf23 1.341e-1 7.504e+0 7.969e-1
19 ENSG00000069849 ATP1B3 3.988e-1 9.643e+0 7.969e-1
20 ENSG00000167861 C17orf28 -1.043e-1 7.264e+0 7.969e-1
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Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20


Download full differential expression gene result:


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