Differential expression result

The differential expression result was calculated using the comparison HMDM_TiO24h1_notreatment24h0 of data set GSE39316-HMDM.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 0 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000137673 MMP7 7.324e-1 8.818e+0 5.638e-1
2 ENSG00000168765 GSTM4 3.712e-1 7.521e+0 5.638e-1
3 ENSG00000185127 C6orf120 1.694e-1 7.318e+0 9.999e-1
4 ENSG00000111215 PRR4 -2.081e-1 7.444e+0 9.999e-1
5 ENSG00000072501 SMC1A -3.213e-1 7.775e+0 9.999e-1
6 ENSG00000181873 C1orf69 -1.693e-1 7.790e+0 9.999e-1
7 ENSG00000203710 CR1 3.243e-1 7.602e+0 9.999e-1
8 ENSG00000100568 VTI1B 3.758e-1 8.087e+0 9.999e-1
9 ENSG00000187272 KRTAP9-8 1.435e-1 7.262e+0 9.999e-1
10 ENSG00000010318 PHF7 -1.146e-1 7.491e+0 9.999e-1
11 ENSG00000174914 OR9G9 -8.157e-2 7.226e+0 9.999e-1
12 ENSG00000138002 IFT172 -3.018e-1 7.874e+0 9.999e-1
13 ENSG00000101197 BIRC7 -8.863e-2 7.232e+0 9.999e-1
14 ENSG00000188306 LRRIQ4 1.265e-1 7.232e+0 9.999e-1
15 ENSG00000148481 C10orf97 3.229e-1 8.487e+0 9.999e-1
16 ENSG00000017427 IGF1 3.357e-1 7.810e+0 9.999e-1
17 ENSG00000067560 RHOA 3.138e-1 1.171e+1 9.999e-1
18 ENSG00000144445 C2orf67 -1.474e-1 7.333e+0 9.999e-1
19 ENSG00000101473 ACOT8 1.763e-1 7.643e+0 9.999e-1
20 ENSG00000170145 SIK2 1.413e-1 7.420e+0 9.999e-1
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Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20


Download full differential expression gene result:


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