Differential expression result

The differential expression result was calculated using the comparison HMDM_TiO6h10_notreatment6h0 of data set GSE39316-HMDM.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 0 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000132334 PTPRE 3.483e-1 9.450e+0 4.087e-1
2 ENSG00000011422 PLAUR 8.762e-1 1.081e+1 4.087e-1
3 ENSG00000164949 GEM 5.145e-1 7.604e+0 4.087e-1
4 ENSG00000139289 PHLDA1 1.165e+0 9.378e+0 4.087e-1
5 ENSG00000147642 -1.228e-1 7.217e+0 4.087e-1
6 ENSG00000117676 RPS6KA1 2.518e-1 8.590e+0 5.415e-1
7 ENSG00000122861 PLAU 7.760e-1 1.094e+1 9.999e-1
8 ENSG00000185022 MAFF 3.604e-1 8.286e+0 9.999e-1
9 ENSG00000111196 MAGOHB -1.519e-1 7.295e+0 9.999e-1
10 ENSG00000187239 FNBP1 -3.057e-1 1.196e+1 9.999e-1
11 ENSG00000053702 NRIP2 -1.315e-1 7.366e+0 9.999e-1
12 ENSG00000157557 ETS2 5.311e-1 9.619e+0 9.999e-1
13 ENSG00000145936 KCNMB1 -5.212e-1 9.255e+0 9.999e-1
14 ENSG00000099749 CYorf15A 1.182e-1 7.231e+0 9.999e-1
15 ENSG00000188931 C1orf192 -1.943e-1 7.337e+0 9.999e-1
16 ENSG00000175197 DDIT3 3.064e-1 8.678e+0 9.999e-1
17 ENSG00000186318 BACE1 -1.022e-1 7.316e+0 9.999e-1
18 ENSG00000162407 PPAP2B 4.764e-1 8.074e+0 9.999e-1
19 ENSG00000197763 TXNRD3 1.004e-1 7.223e+0 9.999e-1
20 ENSG00000174970 OR10AG1 1.138e-1 7.224e+0 9.999e-1
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Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20


Download full differential expression gene result:


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