Differential expression result

The differential expression result was calculated using the comparison HMDM_ZnO24h10_notreatment24h0 of data set GSE39316-HMDM.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 1321 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000100362 PVALB 3.608e+0 7.947e+0 4.704e-16
2 ENSG00000163453 IGFBP7 3.367e+0 8.501e+0 1.923e-15
3 ENSG00000108352 RAPGEFL1 2.818e+0 7.891e+0 7.573e-14
4 ENSG00000164659 KIAA1324L 3.177e+0 8.028e+0 8.571e-14
5 ENSG00000162817 C1orf115 2.961e+0 7.936e+0 1.626e-13
6 ENSG00000171517 LPAR3 1.199e+0 7.370e+0 2.353e-13
7 ENSG00000131355 EMR3 1.773e+0 7.450e+0 3.646e-13
8 ENSG00000181885 CLDN7 2.417e+0 8.026e+0 4.332e-12
9 ENSG00000010219 DYRK4 -1.541e+0 9.481e+0 4.332e-12
10 ENSG00000130413 STK33 1.090e+0 7.587e+0 4.332e-12
11 ENSG00000168135 KCNJ4 2.771e+0 7.544e+0 4.332e-12
12 ENSG00000166920 C15orf48 1.987e+0 9.665e+0 4.684e-12
13 ENSG00000171362 PNMA2 3.683e+0 7.879e+0 5.123e-12
14 ENSG00000166523 CLEC4E 2.183e+0 7.944e+0 6.183e-12
15 ENSG00000120833 SOCS2 2.318e+0 7.782e+0 6.554e-12
16 ENSG00000106236 NPTX2 1.392e+0 7.426e+0 1.091e-11
17 ENSG00000163735 CXCL5 5.891e+0 9.227e+0 2.157e-11
18 ENSG00000117016 RIMS3 2.965e+0 8.490e+0 2.756e-11
19 ENSG00000187957 DNER 1.598e+0 7.379e+0 2.825e-11
20 ENSG00000177469 PTRF 4.071e+0 8.140e+0 4.489e-11
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Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20


Download full differential expression gene result:


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