Differential expression result

The differential expression result was calculated using the comparison HMDM_ZnO24h1_notreatment24h0 of data set GSE39316-HMDM.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 0 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000154930 ACSS1 -6.251e-1 7.988e+0 2.116e-1
2 ENSG00000167670 CHAF1A -2.957e-1 7.458e+0 2.116e-1
3 ENSG00000137673 MMP7 7.352e-1 8.818e+0 2.276e-1
4 ENSG00000185057 1.295e-1 7.317e+0 3.157e-1
5 ENSG00000085231 TAF9 1.295e-1 7.317e+0 3.157e-1
6 ENSG00000143793 C1orf35 -3.566e-1 8.293e+0 3.157e-1
7 ENSG00000167861 C17orf28 -1.281e-1 7.264e+0 3.157e-1
8 ENSG00000101473 ACOT8 2.222e-1 7.643e+0 3.157e-1
9 ENSG00000010318 PHF7 -1.307e-1 7.491e+0 3.157e-1
10 ENSG00000162704 ARPC5 4.876e-1 1.108e+1 3.157e-1
11 ENSG00000100362 PVALB 4.206e-1 7.947e+0 3.157e-1
12 ENSG00000139915 MDGA2 1.063e-1 7.251e+0 3.748e-1
13 ENSG00000138002 IFT172 -3.417e-1 7.874e+0 3.776e-1
14 ENSG00000177485 ZBTB33 2.680e-1 9.968e+0 4.273e-1
15 ENSG00000197045 GMFB 4.342e-1 1.030e+1 4.273e-1
16 ENSG00000112659 CUL9 -5.929e-1 8.306e+0 4.273e-1
17 ENSG00000010219 DYRK4 -3.004e-1 9.481e+0 4.273e-1
18 ENSG00000070269 C14orf101 1.118e-1 7.282e+0 4.308e-1
19 ENSG00000177084 POLE -3.075e-1 7.996e+0 4.643e-1
20 ENSG00000175564 UCP3 -1.597e-1 7.416e+0 4.643e-1
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Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20


Download full differential expression gene result:


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