Differential expression result

The differential expression result was calculated using the comparison HMDM_ZnO6h10_notreatment6h0 of data set GSE39316-HMDM.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 1049 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000131459 GFPT2 1.672e+0 7.458e+0 5.316e-16
2 ENSG00000084734 GCKR 2.096e+0 7.532e+0 3.276e-14
3 ENSG00000115226 FNDC4 9.937e-1 7.382e+0 1.510e-13
4 ENSG00000166670 MMP10 3.940e+0 7.816e+0 1.915e-13
5 ENSG00000182782 NIACR2 1.676e+0 7.475e+0 6.271e-13
6 ENSG00000163421 PROK2 2.704e+0 7.839e+0 2.027e-12
7 ENSG00000162817 C1orf115 2.506e+0 7.936e+0 2.922e-12
8 ENSG00000072682 P4HA2 1.713e+0 8.055e+0 3.896e-11
9 ENSG00000157557 ETS2 2.666e+0 9.619e+0 7.391e-11
10 ENSG00000162711 NLRP3 1.690e+0 9.351e+0 1.257e-10
11 ENSG00000073756 PTGS2 3.985e+0 8.520e+0 2.681e-10
12 ENSG00000105855 ITGB8 1.444e+0 7.640e+0 2.681e-10
13 ENSG00000125845 BMP2 1.005e+0 7.644e+0 4.933e-10
14 ENSG00000135766 EGLN1 1.563e+0 7.936e+0 5.355e-10
15 ENSG00000124102 PI3 6.520e-1 7.308e+0 5.948e-10
16 ENSG00000169908 TM4SF1 3.785e+0 7.882e+0 6.618e-10
17 ENSG00000013619 MAMLD1 1.140e+0 7.666e+0 6.766e-10
18 ENSG00000143333 RGS16 2.556e+0 7.881e+0 7.838e-10
19 ENSG00000164659 KIAA1324L 1.815e+0 8.028e+0 7.888e-10
20 ENSG00000136842 TMOD1 9.774e-1 7.404e+0 9.475e-10
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Page 1 of 852, showing 20 records out of 17029 total, starting on record 1, ending on 20


Download full differential expression gene result:


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