Differential expression result

The differential expression result was calculated using the comparison MWCNT_vs_control_100_1h of data set GSE42066.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 12 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000134107 BHLHE40 8.822e-1 8.255e+0 2.074e-2
2 ENSG00000107104 KANK1 -7.811e-1 8.834e+0 2.074e-2
3 ENSG00000111252 SH2B3 8.006e-1 6.649e+0 2.074e-2
4 ENSG00000078237 C12orf5 6.385e-1 9.154e+0 3.713e-2
5 ENSG00000163378 C3orf64 6.770e-1 5.803e+0 4.341e-2
6 ENSG00000155324 GRAMD3 -6.418e-1 7.491e+0 4.341e-2
7 ENSG00000138640 FAM13A -1.247e+0 1.000e+1 4.341e-2
8 ENSG00000089163 SIRT4 -5.670e-1 5.610e+0 4.341e-2
9 ENSG00000118503 TNFAIP3 -5.253e-1 7.572e+0 4.341e-2
10 ENSG00000136237 RAPGEF5 6.083e-1 6.571e+0 4.341e-2
11 ENSG00000095951 HIVEP1 6.490e-1 7.625e+0 4.341e-2
12 ENSG00000118094 TREH -6.145e-1 4.952e+0 4.495e-2
13 ENSG00000139318 DUSP6 4.733e-1 1.080e+1 4.495e-2
14 ENSG00000129521 EGLN3 -6.788e-1 4.825e+0 4.495e-2
15 ENSG00000167491 GATAD2A 6.011e-1 8.972e+0 4.495e-2
16 ENSG00000150764 DIXDC1 -5.273e-1 6.525e+0 5.531e-2
17 ENSG00000132680 KIAA0907 -6.016e-1 8.481e+0 5.531e-2
18 ENSG00000153922 CHD1 5.058e-1 8.912e+0 5.531e-2
19 ENSG00000111877 MCM9 5.153e-1 6.011e+0 5.531e-2
20 ENSG00000101871 MID1 -4.921e-1 9.456e+0 5.546e-2
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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