Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_100_1h of data set GSE42066.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 18 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000138640 FAM13A -1.677e+0 9.785e+0 5.556e-3
2 ENSG00000107104 KANK1 -9.817e-1 8.733e+0 3.261e-2
3 ENSG00000168209 DDIT4 1.115e+0 1.001e+1 3.261e-2
4 ENSG00000134107 BHLHE40 1.102e+0 8.365e+0 3.261e-2
5 ENSG00000078237 C12orf5 5.992e-1 9.134e+0 3.261e-2
6 ENSG00000115392 FANCL -4.834e-1 8.500e+0 3.261e-2
7 ENSG00000101670 LIPG 4.822e-1 7.815e+0 3.261e-2
8 ENSG00000117586 TNFSF4 -5.249e-1 7.410e+0 3.261e-2
9 ENSG00000089163 SIRT4 -6.475e-1 5.570e+0 3.261e-2
10 ENSG00000100815 TRIP11 -5.807e-1 6.449e+0 3.261e-2
11 ENSG00000115548 JMJD1A -5.585e-1 9.701e+0 3.261e-2
12 ENSG00000197275 RAD54B -4.939e-1 6.409e+0 3.261e-2
13 ENSG00000100906 NFKBIA -5.272e-1 9.846e+0 3.261e-2
14 ENSG00000170631 ZNF16 -4.369e-1 7.731e+0 3.261e-2
15 ENSG00000101871 MID1 -6.207e-1 9.392e+0 3.261e-2
16 ENSG00000143622 RIT1 -4.893e-1 8.331e+0 3.261e-2
17 ENSG00000150764 DIXDC1 -6.535e-1 6.462e+0 3.261e-2
18 ENSG00000088970 NCRNA00153 -5.911e-1 7.257e+0 3.261e-2
19 ENSG00000111252 SH2B3 7.627e-1 6.630e+0 3.261e-2
20 ENSG00000101384 JAG1 4.413e-1 8.082e+0 3.261e-2
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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