Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_100_24h of data set GSE42066.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 16 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000117620 SLC35A3 -7.439e-1 8.436e+0 1.596e-2
2 ENSG00000177311 ZBTB38 -1.161e+0 5.987e+0 1.596e-2
3 ENSG00000112419 PHACTR2 -1.028e+0 6.609e+0 2.082e-2
4 ENSG00000218510 -7.629e-1 7.082e+0 2.082e-2
5 ENSG00000160712 IL6R -1.216e+0 5.650e+0 2.082e-2
6 ENSG00000115009 CCL20 7.441e-1 8.416e+0 4.290e-2
7 ENSG00000181649 PHLDA2 4.106e-1 9.609e+0 4.290e-2
8 ENSG00000197061 HIST1H4C -1.699e+0 8.541e+0 4.290e-2
9 ENSG00000069482 GAL 3.980e-1 7.171e+0 4.290e-2
10 ENSG00000157259 GATAD1 -1.189e+0 7.863e+0 4.608e-2
11 ENSG00000139218 SFRS2IP -6.257e-1 7.675e+0 4.608e-2
12 ENSG00000114439 BBX -6.631e-1 6.329e+0 4.608e-2
13 ENSG00000102753 KPNA3 -8.882e-1 7.185e+0 4.608e-2
14 ENSG00000008283 CYB561 -5.004e-1 7.742e+0 4.608e-2
15 ENSG00000118689 FOXO3 -1.714e+0 7.301e+0 4.608e-2
16 ENSG00000174607 UGT8 -4.808e-1 7.970e+0 4.608e-2
17 ENSG00000117222 RBBP5 -6.130e-1 6.257e+0 4.608e-2
18 ENSG00000167522 ANKRD11 -1.521e+0 6.329e+0 4.608e-2
19 ENSG00000013588 GPRC5A 4.754e-1 1.009e+1 4.608e-2
20 ENSG00000198900 TOP1 -9.026e-1 7.095e+0 4.608e-2
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


<< back to Main Comparsions List | << go to Search DEGs List