Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_10_24h of data set GSE42066.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 1 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000167522 ANKRD11 -9.301e-1 6.625e+0 3.486e-2
2 ENSG00000115762 PLEKHB2 -4.027e-1 1.089e+1 1.817e-1
3 ENSG00000177311 ZBTB38 -6.174e-1 6.259e+0 1.817e-1
4 ENSG00000169926 KLF13 -5.037e-1 6.502e+0 1.963e-1
5 ENSG00000139218 SFRS2IP -3.869e-1 7.794e+0 2.080e-1
6 ENSG00000164134 NARG1 -4.739e-1 5.799e+0 2.699e-1
7 ENSG00000215105 -6.011e-1 7.976e+0 2.699e-1
8 ENSG00000175352 NRIP3 -9.351e-1 5.222e+0 2.699e-1
9 ENSG00000179912 R3HDM2 3.768e-1 7.570e+0 2.699e-1
10 ENSG00000078018 MAP2 -4.001e-1 4.029e+0 2.699e-1
11 ENSG00000140992 PDPK1 -3.788e-1 8.983e+0 2.699e-1
12 ENSG00000169635 HIC2 -3.249e-1 8.101e+0 3.017e-1
13 ENSG00000138435 CHRNA1 -2.742e-1 4.440e+0 3.035e-1
14 ENSG00000198900 TOP1 -6.653e-1 7.214e+0 3.035e-1
15 ENSG00000204256 BRD2 -2.929e-1 8.729e+0 3.040e-1
16 ENSG00000112419 PHACTR2 -5.252e-1 6.861e+0 3.150e-1
17 ENSG00000169760 NLGN1 -3.225e-1 2.457e+0 3.440e-1
18 ENSG00000102753 KPNA3 -3.626e-1 7.447e+0 3.440e-1
19 ENSG00000164631 ZNF12 -4.040e-1 7.330e+0 3.440e-1
20 ENSG00000137868 STRA6 -2.635e-1 6.436e+0 3.440e-1
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Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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