Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_100_1h of data set GSE42067.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 73 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000125740 FOSB 1.354e+0 9.064e+0 1.246e-3
2 ENSG00000122877 EGR2 1.775e+0 1.047e+1 1.246e-3
3 ENSG00000139278 GLIPR1 2.601e+0 8.013e+0 1.246e-3
4 ENSG00000168386 FILIP1L 1.582e+0 6.074e+0 1.246e-3
5 ENSG00000179388 EGR3 2.139e+0 1.029e+1 1.246e-3
6 ENSG00000227184 1.512e+0 8.823e+0 1.246e-3
7 ENSG00000197061 HIST1H4C 1.970e+0 9.689e+0 1.246e-3
8 ENSG00000118263 KLF7 1.255e+0 8.824e+0 1.670e-3
9 ENSG00000117228 GBP1 1.583e+0 9.613e+0 1.682e-3
10 ENSG00000067082 COPEB 1.253e+0 1.033e+1 1.682e-3
11 ENSG00000162702 ZNF281 1.232e+0 8.970e+0 1.852e-3
12 ENSG00000081052 COL4A4 1.429e+0 7.078e+0 2.611e-3
13 ENSG00000137801 THBS1 1.472e+0 7.802e+0 3.485e-3
14 ENSG00000149591 TAGLN 1.707e+0 1.022e+1 3.485e-3
15 ENSG00000104824 HNRNPL 9.430e-1 9.413e+0 3.687e-3
16 ENSG00000162772 ATF3 9.410e-1 9.467e+0 4.527e-3
17 ENSG00000164114 MAP9 1.173e+0 4.888e+0 5.528e-3
18 ENSG00000136628 EPRS 8.761e-1 8.627e+0 5.937e-3
19 ENSG00000143367 TUFT1 7.643e-1 1.157e+1 6.716e-3
20 ENSG00000164442 CITED2 8.768e-1 9.162e+0 8.959e-3
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Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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