Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_100_24h of data set GSE42067.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 9 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000108846 ABCC3 8.666e-1 7.317e+0 7.024e-3
2 ENSG00000144560 VGLL4 6.479e-1 8.411e+0 2.648e-2
3 ENSG00000078018 MAP2 -7.405e-1 5.468e+0 2.648e-2
4 ENSG00000168461 RAB31 5.950e-1 9.360e+0 2.648e-2
5 ENSG00000125355 FAM70A -9.398e-1 4.763e+0 2.648e-2
6 ENSG00000157445 CACNA2D3 -7.879e-1 6.702e+0 3.595e-2
7 ENSG00000168152 THAP9 -6.974e-1 4.140e+0 3.595e-2
8 ENSG00000137331 IER3 1.047e+0 7.672e+0 3.595e-2
9 ENSG00000133048 CHI3L1 7.057e-1 6.629e+0 4.075e-2
10 ENSG00000167755 KLK6 5.023e-1 5.003e+0 5.877e-2
11 ENSG00000108691 CCL2 5.444e-1 4.394e+0 5.877e-2
12 ENSG00000142627 EPHA2 5.298e-1 7.684e+0 5.877e-2
13 ENSG00000171119 NRTN -6.098e-1 5.709e+0 6.186e-2
14 ENSG00000174175 SELP 5.656e-1 4.850e+0 6.186e-2
15 ENSG00000167106 FAM102A 5.007e-1 7.995e+0 6.186e-2
16 ENSG00000171345 KRT19 -6.909e-1 5.214e+0 6.366e-2
17 ENSG00000145936 KCNMB1 4.560e-1 4.750e+0 6.366e-2
18 ENSG00000106688 SLC1A1 -4.879e-1 5.749e+0 7.209e-2
19 ENSG00000174640 SLCO2A1 5.476e-1 5.428e+0 7.209e-2
20 ENSG00000102854 MSLN -5.021e-1 7.264e+0 7.209e-2
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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