Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_10_1h of data set GSE42067.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 43 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000081052 COL4A4 1.180e+0 6.953e+0 2.423e-3
2 ENSG00000197061 HIST1H4C 1.531e+0 9.469e+0 5.650e-3
3 ENSG00000163848 ZNF148 9.161e-1 6.716e+0 5.650e-3
4 ENSG00000114857 NKTR 7.876e-1 7.775e+0 5.650e-3
5 ENSG00000131711 MAP1B 8.174e-1 8.769e+0 5.650e-3
6 ENSG00000104824 HNRNPL 8.758e-1 9.379e+0 5.650e-3
7 ENSG00000114120 SLC25A36 8.246e-1 8.432e+0 5.650e-3
8 ENSG00000155850 SLC26A2 1.219e+0 8.452e+0 7.611e-3
9 ENSG00000136628 EPRS 7.970e-1 8.588e+0 1.214e-2
10 ENSG00000118263 KLF7 8.412e-1 8.617e+0 1.214e-2
11 ENSG00000064115 TM7SF3 7.042e-1 5.534e+0 1.402e-2
12 ENSG00000164114 MAP9 8.581e-1 4.730e+0 1.445e-2
13 ENSG00000168807 SNTB2 9.991e-1 7.469e+0 1.445e-2
14 ENSG00000101972 STAG2 7.799e-1 8.882e+0 1.488e-2
15 ENSG00000139218 SFRS2IP 5.252e-1 7.259e+0 1.488e-2
16 ENSG00000125249 RAP2A 4.932e-1 6.912e+0 1.596e-2
17 ENSG00000162702 ZNF281 6.920e-1 8.700e+0 1.677e-2
18 ENSG00000102753 KPNA3 7.815e-1 7.073e+0 1.705e-2
19 ENSG00000130844 ZNF331 5.563e-1 7.289e+0 1.705e-2
20 ENSG00000119969 HELLS 1.261e+0 6.898e+0 1.705e-2
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


<< back to Main Comparsions List | << go to Search DEGs List