Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_100_24h of data set GSE42068.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 498 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000167522 ANKRD11 -2.047e+0 6.703e+0 1.508e-4
2 ENSG00000135362 -1.780e+0 7.577e+0 1.508e-4
3 ENSG00000078081 LAMP3 2.183e+0 4.710e+0 1.912e-4
4 ENSG00000074706 IPCEF1 -1.556e+0 8.979e+0 1.912e-4
5 ENSG00000081041 CXCL2 2.891e+0 9.288e+0 1.912e-4
6 ENSG00000129277 CCL4 2.557e+0 1.067e+1 1.912e-4
7 ENSG00000055732 MCOLN3 1.548e+0 8.273e+0 1.912e-4
8 ENSG00000126353 CCR7 3.368e+0 5.464e+0 1.912e-4
9 ENSG00000056558 TRAF1 1.421e+0 8.376e+0 2.666e-4
10 ENSG00000023445 BIRC3 1.827e+0 7.038e+0 2.666e-4
11 ENSG00000168734 PKIG 1.322e+0 8.275e+0 2.971e-4
12 ENSG00000153234 NR4A2 2.319e+0 5.372e+0 2.971e-4
13 ENSG00000173198 CYSLTR1 -2.286e+0 5.144e+0 3.123e-4
14 ENSG00000143322 ABL2 1.627e+0 6.851e+0 3.274e-4
15 ENSG00000154380 ENAH -1.454e+0 8.026e+0 3.927e-4
16 ENSG00000119508 NR4A3 1.493e+0 5.965e+0 3.927e-4
17 ENSG00000163739 CXCL1 2.798e+0 9.389e+0 5.132e-4
18 ENSG00000125726 CD70 1.599e+0 8.703e+0 5.704e-4
19 ENSG00000163734 CXCL3 2.385e+0 9.344e+0 5.704e-4
20 ENSG00000162772 ATF3 1.191e+0 1.206e+1 5.704e-4
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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