Differential expression result

The differential expression result was calculated using the comparison TiO2-NB_vs_control_10_1h of data set GSE42068.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 0 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000179242 CDH4 -6.633e-1 5.456e+0 6.312e-1
2 ENSG00000092758 COL9A3 -6.932e-1 4.747e+0 1.000e+0
3 ENSG00000180891 CUEDC1 -5.043e-1 5.555e+0 1.000e+0
4 ENSG00000125869 C20orf103 7.253e-1 6.357e+0 1.000e+0
5 ENSG00000214944 -5.642e-1 5.254e+0 1.000e+0
6 ENSG00000225670 -4.734e-1 5.225e+0 1.000e+0
7 ENSG00000197417 CARKL -4.701e-1 6.127e+0 1.000e+0
8 ENSG00000139218 SFRS2IP -5.418e-1 9.573e+0 1.000e+0
9 ENSG00000211650 IGLV5-45 4.991e-1 3.435e+0 1.000e+0
10 ENSG00000228668 6.036e-1 3.903e+0 1.000e+0
11 ENSG00000173702 MUC13 -4.829e-1 4.843e+0 1.000e+0
12 ENSG00000153822 KCNJ16 -3.762e-1 3.656e+0 1.000e+0
13 ENSG00000173575 CHD2 -4.989e-1 4.290e+0 1.000e+0
14 ENSG00000174093 4.718e-1 5.333e+0 1.000e+0
15 ENSG00000087085 ACHE 4.137e-1 5.021e+0 1.000e+0
16 ENSG00000156049 GNA14 3.857e-1 4.749e+0 1.000e+0
17 ENSG00000163563 MNDA 5.513e-1 7.366e+0 1.000e+0
18 ENSG00000102879 CORO1A -5.413e-1 9.120e+0 1.000e+0
19 ENSG00000135914 HTR2B 5.788e-1 5.037e+0 1.000e+0
20 ENSG00000111674 ENO2 3.856e-1 6.380e+0 1.000e+0
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Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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