Differential expression result

The differential expression result was calculated using the comparison MWCNT_vs_vehicle_control_24h_with_IL-13 of data set GSE43515.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 912 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000181019 NQO1 -2.283e+0 1.152e+1 7.357e-6
2 ENSG00000160211 G6PD -1.645e+0 1.105e+1 3.628e-5
3 ENSG00000073605 GSDMB 1.588e+0 7.730e+0 3.628e-5
4 ENSG00000130707 ASS1 -1.625e+0 9.237e+0 3.628e-5
5 ENSG00000184254 ALDH1A3 1.931e+0 1.033e+1 3.628e-5
6 ENSG00000113916 BCL6 1.531e+0 8.526e+0 3.628e-5
7 ENSG00000010278 CD9 -1.398e+0 1.166e+1 3.628e-5
8 ENSG00000115758 ODC1 -1.650e+0 1.019e+1 3.628e-5
9 ENSG00000196549 MME 1.663e+0 9.846e+0 4.162e-5
10 ENSG00000100889 PCK2 -1.370e+0 8.547e+0 4.587e-5
11 ENSG00000136960 ENPP2 -2.006e+0 8.829e+0 9.062e-5
12 ENSG00000152217 SETBP1 1.633e+0 7.981e+0 9.062e-5
13 ENSG00000120053 GOT1 -1.316e+0 8.878e+0 1.081e-4
14 ENSG00000112936 C7 1.980e+0 8.394e+0 1.264e-4
15 ENSG00000140105 WARS -1.099e+0 1.157e+1 1.264e-4
16 ENSG00000169908 TM4SF1 -1.295e+0 9.800e+0 1.264e-4
17 ENSG00000010818 HIVEP2 1.069e+0 7.794e+0 1.348e-4
18 ENSG00000102007 PLP2 -1.265e+0 1.006e+1 1.348e-4
19 ENSG00000240291 1.238e+0 5.942e+0 1.348e-4
20 ENSG00000070669 ASNS -1.871e+0 1.141e+1 1.392e-4
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Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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