Differential expression result

The differential expression result was calculated using the comparison MWCNT_vs_vehicle_control_4h_with_IL-13 of data set GSE43515.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 609 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000165272 AQP3 -1.639e+0 9.372e+0 6.044e-6
2 ENSG00000123146 CD97 -1.623e+0 8.426e+0 6.044e-6
3 ENSG00000181019 NQO1 -1.905e+0 1.130e+1 6.044e-6
4 ENSG00000115758 ODC1 -1.606e+0 1.024e+1 6.044e-6
5 ENSG00000005884 ITGA3 -1.612e+0 7.189e+0 7.696e-6
6 ENSG00000136960 ENPP2 -2.121e+0 8.835e+0 7.696e-6
7 ENSG00000166592 RRAD -1.617e+0 7.444e+0 7.696e-6
8 ENSG00000149968 MMP3 -2.081e+0 6.679e+0 8.317e-6
9 ENSG00000138640 FAM13A 1.456e+0 8.779e+0 9.100e-6
10 ENSG00000149256 ODZ4 1.465e+0 8.105e+0 9.100e-6
11 ENSG00000117594 HSD11B1 -1.445e+0 7.299e+0 1.020e-5
12 ENSG00000125968 ID1 -2.880e+0 7.663e+0 1.020e-5
13 ENSG00000160211 G6PD -1.439e+0 1.109e+1 1.252e-5
14 ENSG00000113916 BCL6 1.273e+0 8.622e+0 1.252e-5
15 ENSG00000189056 RELN -1.497e+0 7.721e+0 1.252e-5
16 ENSG00000152217 SETBP1 1.224e+0 8.166e+0 1.252e-5
17 ENSG00000172594 SMPDL3A 1.160e+0 1.088e+1 1.252e-5
18 ENSG00000010278 CD9 -1.273e+0 1.128e+1 1.375e-5
19 ENSG00000123689 G0S2 -2.084e+0 8.978e+0 1.587e-5
20 ENSG00000186918 ZNF395 1.255e+0 9.047e+0 2.259e-5
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Page 1 of 590, showing 20 records out of 11800 total, starting on record 1, ending on 20


Download full differential expression gene result:


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