Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 1137, showing 20 records out of 22732 total, starting on record 1, ending on 20.


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Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000125144 MT1G 5.707e+0 9.554e+0 5.444e-7
2 ENSG00000170345 FOS 3.298e+0 7.621e+0 3.108e-6
3 ENSG00000204389 HSPA1A 4.094e+0 9.909e+0 3.108e-6
4 ENSG00000100292 HMOX1 2.902e+0 9.834e+0 1.423e-5
5 ENSG00000170385 SLC30A1 2.375e+0 8.774e+0 7.393e-5
6 ENSG00000240457 2.878e+0 5.097e+0 8.547e-5
7 ENSG00000173110 HSPA6 3.111e+0 7.771e+0 8.770e-5
8 ENSG00000204388 HSPA1B 4.119e+0 8.578e+0 1.613e-4
9 ENSG00000132002 DNAJB1 2.444e+0 1.020e+1 3.924e-4
10 ENSG00000205364 MT1M 3.895e+0 7.601e+0 4.174e-4
11 ENSG00000120738 EGR1 1.957e+0 9.827e+0 6.775e-4
12 ENSG00000178381 ZFAND2A 1.800e+0 8.206e+0 8.421e-4
13 ENSG00000175197 DDIT3 1.976e+0 6.849e+0 8.421e-4
14 ENSG00000205362 MT1A 2.726e+0 9.036e+0 8.421e-4
15 ENSG00000120694 HSPH1 2.041e+0 9.871e+0 8.478e-4
16 ENSG00000143384 MCL1 1.558e+0 1.115e+1 2.562e-3
17 ENSG00000144802 NFKBIZ 1.684e+0 6.204e+0 2.667e-3
18 ENSG00000229230 1.454e+0 1.113e+1 3.744e-3
19 ENSG00000140403 DNAJA4 1.604e+0 6.885e+0 4.364e-3
20 ENSG00000114315 HES1 1.324e+0 8.437e+0 4.364e-3
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Page 1 of 1137, showing 20 records out of 22732 total, starting on record 1, ending on 20


Download full differential expression gene result:


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