Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 2 of 1137, showing 20 records out of 22732 total, starting on record 21, ending on 40.


First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000059728 MXD1 1.263e+0 6.697e+0 6.147e-3
2 ENSG00000180660 MAB21L1 -1.276e+0 8.468e+0 7.159e-3
3 ENSG00000110172 CHORDC1 1.562e+0 6.954e+0 1.106e-2
4 ENSG00000199004 MIRN21 1.263e+0 7.498e+0 1.634e-2
5 ENSG00000239850 1.815e+0 6.473e+0 2.369e-2
6 ENSG00000168209 DDIT4 1.245e+0 7.004e+0 2.409e-2
7 ENSG00000087074 PPP1R15A 1.168e+0 8.054e+0 2.631e-2
8 ENSG00000141682 PMAIP1 1.250e+0 6.007e+0 2.702e-2
9 ENSG00000152049 KCNE4 8.692e-1 6.845e+0 2.702e-2
10 ENSG00000207752 MIRN199A1 1.786e+0 5.021e+0 2.929e-2
11 ENSG00000152518 ZFP36L2 -9.466e-1 9.414e+0 2.929e-2
12 ENSG00000051108 HERPUD1 1.019e+0 9.902e+0 2.929e-2
13 ENSG00000111276 CDKN1B -8.965e-1 6.249e+0 2.945e-2
14 ENSG00000207424 SNORD30 -1.213e+0 6.110e+0 3.316e-2
15 ENSG00000173334 TRIB1 9.150e-1 7.866e+0 3.316e-2
16 ENSG00000118515 SGK1 9.598e-1 7.818e+0 3.795e-2
17 ENSG00000176700 SCAND2 9.835e-1 4.990e+0 4.110e-2
18 ENSG00000181472 ZBTB2 1.719e+0 7.373e+0 4.162e-2
19 ENSG00000004478 FKBP4 8.857e-1 8.367e+0 4.268e-2
20 ENSG00000117289 TXNIP -7.576e-1 1.007e+1 4.648e-2
First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 2 of 1137, showing 20 records out of 22732 total, starting on record 21, ending on 40


Download full differential expression gene result:


<< back to Main Comparsions List | << go to Search DEGs List