Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 4 of 1137, showing 20 records out of 22732 total, starting on record 61, ending on 80.


First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000187678 SPRY4 9.174e-1 8.155e+0 1.390e-1
2 ENSG00000168386 FILIP1L 8.055e-1 6.516e+0 1.414e-1
3 ENSG00000199072 MIRNLET7F1 1.227e+0 4.961e+0 1.650e-1
4 ENSG00000150991 UBC 1.099e+0 9.298e+0 1.754e-1
5 ENSG00000144655 AXUD1 7.645e-1 7.701e+0 1.797e-1
6 ENSG00000171223 JUNB 7.173e-1 9.971e+0 1.995e-1
7 ENSG00000185112 FAM43A -6.349e-1 7.121e+0 2.110e-1
8 ENSG00000086061 DNAJA1 1.047e+0 8.666e+0 2.131e-1
9 ENSG00000044574 HSPA5 7.307e-1 1.126e+1 2.131e-1
10 ENSG00000019549 SNAI2 -7.675e-1 9.621e+0 2.207e-1
11 ENSG00000201669 SNORD31 -9.293e-1 4.996e+0 2.389e-1
12 ENSG00000112773 FAM46A 6.439e-1 7.306e+0 2.557e-1
13 ENSG00000112972 HMGCS1 9.540e-1 8.173e+0 2.615e-1
14 ENSG00000126778 SIX1 -7.271e-1 8.380e+0 2.620e-1
15 ENSG00000172273 HINFP 6.258e-1 6.524e+0 2.620e-1
16 ENSG00000160570 DEDD2 5.918e-1 7.500e+0 2.747e-1
17 ENSG00000167842 MIS12 8.870e-1 6.545e+0 2.771e-1
18 ENSG00000223046 -7.275e-1 3.295e+0 2.862e-1
19 ENSG00000172466 ZNF24 6.527e-1 7.216e+0 3.133e-1
20 ENSG00000206942 SNORA9 -8.462e-1 5.747e+0 3.153e-1
First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 4 of 1137, showing 20 records out of 22732 total, starting on record 61, ending on 80


Download full differential expression gene result:


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