Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 5 of 1137, showing 20 records out of 22732 total, starting on record 81, ending on 100.


First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000252804 -9.847e-1 3.554e+0 3.935e-1
2 ENSG00000134954 ETS1 7.448e-1 9.607e+0 3.977e-1
3 ENSG00000142188 TMEM50B 7.012e-1 6.946e+0 3.977e-1
4 ENSG00000166483 WEE1 9.931e-1 7.753e+0 3.977e-1
5 ENSG00000115963 RND3 7.270e-1 1.091e+1 3.977e-1
6 ENSG00000128590 DNAJB9 6.549e-1 6.461e+0 3.977e-1
7 ENSG00000138166 DUSP 6.432e-1 8.775e+0 4.056e-1
8 ENSG00000241066 8.428e-1 6.208e+0 4.056e-1
9 ENSG00000122861 PLAU -7.117e-1 8.111e+0 4.056e-1
10 ENSG00000116731 PRDM2 6.817e-1 6.588e+0 4.056e-1
11 ENSG00000160888 IER2 5.754e-1 9.156e+0 4.056e-1
12 ENSG00000143322 ABL2 7.445e-1 8.739e+0 4.136e-1
13 ENSG00000116741 RGS2 6.906e-1 7.086e+0 4.136e-1
14 ENSG00000222701 -6.220e-1 2.525e+0 4.337e-1
15 ENSG00000006062 MAP3K14 6.699e-1 6.835e+0 4.602e-1
16 ENSG00000198551 ZNF627 6.785e-1 6.440e+0 4.875e-1
17 ENSG00000175746 C15orf54 -5.890e-1 3.293e+0 4.973e-1
18 ENSG00000163660 CCNL1 7.561e-1 7.838e+0 5.171e-1
19 ENSG00000197622 CDC42SE1 8.407e-1 8.367e+0 5.220e-1
20 ENSG00000100591 AHSA1 6.685e-1 9.086e+0 5.220e-1
First| | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 5 of 1137, showing 20 records out of 22732 total, starting on record 81, ending on 100


Download full differential expression gene result:


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