Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 6 of 1137, showing 20 records out of 22732 total, starting on record 101, ending on 120.


First| | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000156273 BACH1 7.721e-1 8.042e+0 5.221e-1
2 ENSG00000060140 STYK1 5.169e-1 5.923e+0 5.314e-1
3 ENSG00000006652 IFRD1 7.312e-1 7.723e+0 5.314e-1
4 ENSG00000200312 -7.371e-1 3.760e+0 5.321e-1
5 ENSG00000176697 BDNF 8.317e-1 6.331e+0 5.321e-1
6 ENSG00000151929 BAG3 6.526e-1 9.254e+0 5.431e-1
7 ENSG00000113916 BCL6 9.033e-1 7.309e+0 5.431e-1
8 ENSG00000213190 MLLT11 6.054e-1 8.825e+0 5.541e-1
9 ENSG00000146233 CYP39A1 -5.044e-1 3.410e+0 5.577e-1
10 ENSG00000251845 -1.005e+0 3.626e+0 5.577e-1
11 ENSG00000165997 ARL5B 6.358e-1 7.905e+0 5.577e-1
12 ENSG00000128965 CHAC1 6.848e-1 6.851e+0 5.718e-1
13 ENSG00000144355 DLX1 -4.845e-1 6.736e+0 6.597e-1
14 ENSG00000107968 MAP3K8 5.551e-1 6.571e+0 6.744e-1
15 ENSG00000154642 C21orf91 6.617e-1 5.947e+0 6.848e-1
16 ENSG00000214954 LRRC69 -5.910e-1 4.375e+0 6.848e-1
17 ENSG00000080824 HSP90AA2 6.600e-1 1.145e+1 6.887e-1
18 ENSG00000109971 HSPA8 4.842e-1 1.255e+1 7.088e-1
19 ENSG00000239590 -5.039e-1 2.989e+0 7.328e-1
20 ENSG00000206874 SNORD26 -1.173e+0 5.616e+0 7.547e-1
First| | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | | Last



Page 6 of 1137, showing 20 records out of 22732 total, starting on record 101, ending on 120


Download full differential expression gene result:


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