Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 7 of 1137, showing 20 records out of 22732 total, starting on record 121, ending on 140.


First| | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000186480 INSIG1 5.606e-1 8.548e+0 7.547e-1
2 ENSG00000173875 ZNF791 8.492e-1 7.126e+0 7.582e-1
3 ENSG00000245848 -5.440e-1 5.697e+0 7.582e-1
4 ENSG00000178860 MSC -4.994e-1 7.031e+0 7.582e-1
5 ENSG00000172071 EIF2AK3 6.916e-1 6.734e+0 7.582e-1
6 ENSG00000212340 -7.282e-1 3.187e+0 7.582e-1
7 ENSG00000187791 -5.397e-1 3.476e+0 7.582e-1
8 ENSG00000139289 PHLDA1 4.781e-1 8.814e+0 7.582e-1
9 ENSG00000155621 C9orf85 7.172e-1 6.094e+0 7.582e-1
10 ENSG00000175213 ZNF408 5.110e-1 5.907e+0 7.582e-1
11 ENSG00000242093 5.078e-1 8.393e+0 7.582e-1
12 ENSG00000206781 -5.057e-1 3.234e+0 7.582e-1
13 ENSG00000176171 BNIP3 8.306e-1 9.598e+0 7.582e-1
14 ENSG00000132823 C20orf111 7.947e-1 6.895e+0 7.582e-1
15 ENSG00000227814 -1.149e+0 3.305e+0 7.582e-1
16 ENSG00000133639 BTG1 5.627e-1 8.509e+0 7.582e-1
17 ENSG00000238996 -4.501e-1 4.351e+0 7.582e-1
18 ENSG00000125968 ID1 -5.729e-1 9.090e+0 7.582e-1
19 ENSG00000034677 RNF19A 7.336e-1 8.224e+0 7.582e-1
20 ENSG00000128342 LIF -6.096e-1 8.985e+0 7.582e-1
First| | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | | Last



Page 7 of 1137, showing 20 records out of 22732 total, starting on record 121, ending on 140


Download full differential expression gene result:


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