Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 8 of 1137, showing 20 records out of 22732 total, starting on record 141, ending on 160.


First| | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000207487 SNORD22 -7.006e-1 4.528e+0 7.582e-1
2 ENSG00000130066 SAT1 8.402e-1 9.152e+0 7.582e-1
3 ENSG00000157557 ETS2 5.349e-1 7.664e+0 7.582e-1
4 ENSG00000181652 ATG9B -7.447e-1 6.365e+0 7.582e-1
5 ENSG00000238581 -5.182e-1 4.705e+0 7.582e-1
6 ENSG00000125245 GPR18 -7.382e-1 3.198e+0 7.582e-1
7 ENSG00000136158 SPRY2 6.530e-1 8.284e+0 7.582e-1
8 ENSG00000165655 ZNF503 -4.260e-1 6.772e+0 7.582e-1
9 ENSG00000089335 ZNF302 6.261e-1 6.956e+0 7.582e-1
10 ENSG00000224411 6.727e-1 5.759e+0 7.582e-1
11 ENSG00000119938 PPP1R3C 6.407e-1 9.057e+0 7.582e-1
12 ENSG00000123358 NR4A1 5.570e-1 8.185e+0 7.582e-1
13 ENSG00000200168 -4.926e-1 4.349e+0 7.582e-1
14 ENSG00000067064 IDI1 5.494e-1 8.620e+0 7.582e-1
15 ENSG00000196110 ZNF699 8.876e-1 5.984e+0 7.582e-1
16 ENSG00000239806 -4.190e-1 3.148e+0 7.582e-1
17 ENSG00000199753 SNORD104 -6.312e-1 6.859e+0 7.582e-1
18 ENSG00000149257 SERPINH1 5.341e-1 1.025e+1 7.582e-1
19 ENSG00000199241 -8.684e-1 3.167e+0 7.582e-1
20 ENSG00000111011 RSRC2 6.058e-1 7.784e+0 7.582e-1
First| | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | | Last



Page 8 of 1137, showing 20 records out of 22732 total, starting on record 141, ending on 160


Download full differential expression gene result:


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