Differential expression result

The differential expression result was calculated using the comparison HP1_vs_none_2h of data set GSE45322.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 41 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 9 of 1137, showing 20 records out of 22732 total, starting on record 161, ending on 180.


First| | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000170631 ZNF16 4.371e-1 6.030e+0 7.582e-1
2 ENSG00000164256 PRDM9 -5.338e-1 3.394e+0 7.582e-1
3 ENSG00000243125 -5.471e-1 4.365e+0 7.582e-1
4 ENSG00000207808 MIRN27A 6.039e-1 5.940e+0 7.582e-1
5 ENSG00000179546 HTR1D -5.263e-1 5.492e+0 7.582e-1
6 ENSG00000197475 -7.649e-1 3.844e+0 7.582e-1
7 ENSG00000163659 TIPARP 5.073e-1 9.560e+0 7.582e-1
8 ENSG00000143889 HNRPLL 4.922e-1 7.065e+0 7.582e-1
9 ENSG00000143252 SDHC -4.557e-1 6.524e+0 7.582e-1
10 ENSG00000239307 -4.642e-1 4.130e+0 7.582e-1
11 ENSG00000145780 FEM1C 4.634e-1 7.664e+0 7.582e-1
12 ENSG00000148677 ANKRD1 4.399e-1 1.012e+1 7.582e-1
13 ENSG00000209707 MIRN24-2 7.430e-1 4.700e+0 7.582e-1
14 ENSG00000122482 ZNF644 7.279e-1 6.815e+0 7.582e-1
15 ENSG00000125812 GZF1 4.859e-1 7.066e+0 7.582e-1
16 ENSG00000139725 RHOF -6.125e-1 5.907e+0 7.582e-1
17 ENSG00000172123 SLFN12 5.038e-1 6.700e+0 7.582e-1
18 ENSG00000154165 GPR15 -4.649e-1 4.030e+0 7.582e-1
19 ENSG00000179225 -5.265e-1 3.939e+0 7.582e-1
20 ENSG00000199461 7.658e-1 2.481e+0 7.582e-1
First| | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | | Last



Page 9 of 1137, showing 20 records out of 22732 total, starting on record 161, ending on 180


Download full differential expression gene result:


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