Differential expression result

The differential expression result was calculated using the comparison ultrafine_particle_vs_vehicle of data set GSE4567.


With the default cutt-offs adjusted P-value <=0.05 and abs[logFC] >=0.585 or abs(FC) >=1.5, there are 65 genes in RED detected as differentially expressed genes (DEGs). The genes were ordered by ascending Adj_P_Value.



Table columns explanation:


Ensembl ID - Ensembl gene identifier based on Ensembl database.


HGNC automatic name and HGNC curated name - Most human genes have an associated HGNC symbol from the HUGO Gene Nomenclature Committee. If the gene or transcript comes from the Ensembl Genebuild's automated pipeline only, the HGNC symbol will have HGNC automatic associated with it. If it is a manually curated transcript from Havana/Vega, it will have HGNC curated associated with it. (Ref: link).


log2_fold_change - log2 value of the fold change (FC) in expression between sample groups. E.g. 1 means that one group had on average half the expression of the other group. -1 reverses the direction of the comparison.


AveExpr - average (log2) expression value across both sample groups. (*Available for one channel data.)


Adj_P_Value - P value for differential expression adjusted using the Benjamini-Hochberg correction to control the false discovery rate (FDR).



Page 1 of 946, showing 20 records out of 18919 total, starting on record 1, ending on 20.


| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last
Ensembl ID HGNC automatic name HGNC curated name log2_fold_change AveExpr Adj_P_Value
1 ENSG00000138061 CYP1B1 -2.904e+0 6.650e+0 5.340e-9
2 ENSG00000108691 CCL2 -1.403e+0 1.129e+1 4.514e-8
3 ENSG00000100292 HMOX1 -1.350e+0 1.160e+1 4.514e-8
4 ENSG00000063438 PDCD6 -1.393e+0 8.412e+0 4.514e-8
5 ENSG00000178878 APOLD1 -1.276e+0 7.553e+0 5.034e-8
6 ENSG00000140465 CYP1A1 -1.963e+0 1.085e+1 5.034e-8
7 ENSG00000136244 IL6 -1.191e+0 8.877e+0 6.923e-8
8 ENSG00000007908 SELE -2.146e+0 9.655e+0 9.093e-8
9 ENSG00000117525 F3 -1.522e+0 8.710e+0 9.846e-8
10 ENSG00000163659 TIPARP -1.174e+0 1.076e+1 2.657e-7
11 ENSG00000144476 CXCR7 -1.061e+0 8.488e+0 2.706e-7
12 ENSG00000185022 MAFF -8.136e-1 1.063e+1 7.562e-7
13 ENSG00000116991 SIPA1L2 -1.201e+0 7.413e+0 7.562e-7
14 ENSG00000023909 GCLM -9.245e-1 9.663e+0 7.562e-7
15 ENSG00000073756 PTGS2 -1.110e+0 1.112e+1 1.102e-6
16 ENSG00000179151 EDC3 -8.439e-1 9.483e+0 1.242e-6
17 ENSG00000169429 IL8 -1.281e+0 9.881e+0 1.242e-6
18 ENSG00000221869 CEBPD -1.173e+0 1.018e+1 1.595e-6
19 ENSG00000108551 RASD1 -9.498e-1 9.524e+0 2.395e-6
20 ENSG00000184254 ALDH1A3 -9.212e-1 1.054e+1 2.461e-6
| << Previous| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | | Last



Page 1 of 946, showing 20 records out of 18919 total, starting on record 1, ending on 20


Download full differential expression gene result:


<< back to Main Comparsions List | << go to Search DEGs List