Browser sample sets

We currently have collected 28 sample sets, which includes unique 634 samples. Sample annotation could be find here.


Set ID Set Title Citation Type Treatment Sample Number
GSE51186 Transcriptome study of THP-1 human monocytes following exposure for 4 h or 24 h to 50 uM S-Nitrosogl... Ronzani C, Safa... human monocytes culture medium, GSNO, GSNO loaded - Eudragit RL nanoparticles, Eudragit RL nanoparticles 34
GSE45869 Transcriptome study of human mammary epithelial cells following exposure to polymeric Eudragit RS na... Rajaa Hussien, ... mammary epithelial cells culture medium, Eudragit RS nanoparticles 12
GSE45322 Expression data from human olfactory neurosphere derived cells (hONS) established from adult donors ... hONS ZnO nanoparticles (Nanosun), ZnO nanoparticles (Z-COTE), ZnO nanoparticles (HP1), ZnO nanoparticles (MAX) 40
GSE43515 Effect of MWCNT on Lung Fibroblast gene expression... lung fibroblasts (16lu) CBNP with IL-13, CBNP w/o IL-13, MWCNT with IL-13, MWCNT w/o IL-13 54
GSE42068 Three human cell types respond to multi-walled carbon nanotubes and titanium dioxide nanobelts with ... Tilton SC, Kari... human acute monocytic leukemia (THP-1) multi-walled carbon nanotubes (MWCNT), titanium nanobelts (TiO2-NB) 30
GSE42067 Three human cell types respond to multi-walled carbon nanotubes and titanium dioxide nanobelts with ... Tilton SC, Kari... small airway epithelial (SAE) multi-walled carbon nanotubes (MWCNT), titanium nanobelts (TiO2-NB) 30
GSE42066 Three human cell types respond to multi-walled carbon nanotubes and titanium dioxide nanobelts with ... Tilton SC, Kari... human colorectal/colon adenocarcinoma (Caco-2/HT29-MTX) multi-walled carbon nanotubes (MWCNT), titanium nanobelts (TiO2-NB) 30
GSE33278 Molecular responses of human lung epithelial cells to the toxicity of copper oxide nanoparticles inf... Hanagata N, Zhu... A549 CuO 6
GSE25167 Transcriptional responses to nanoparticulate matter in human skin-derived cancer cells... Moos PJ, Olszew... HaCaT TiO2, ZnCl2, ZnO 15
GSE14910 Transcriptional responses to nanoparticulate matter in human colon cancer cells.... Moos PJ, Olszew... RKO Al2O3, carbon black, Fe2O3, micro ZnO, SiO2, TiO2, ZnO 32
GSE20431 Gene expression profiling on FePro labeled bone marrow stromal cells... Balakumaran A, ... bone marrow stromal cell line FePro, Gold nanoparticle 15
GSE39330-Jurkat Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... Jurkat ZnO 12
GSE39330-HMDM Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... HMDM ZnO 12
GSE39330-MDDC Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... MDDC ZnO 20
GSE39330-Jurkat_Dose Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... Jurkat ZnO 15
GSE39330-Jurkat_NPs Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... Jurkat ZnO 15
GSE16727 Human keratinocytes exposed to tungsten carbide and tungsten carbide cobalt nanoparticles and cobalt... Busch W, K├╝hne... HaCaT CoCl2, WC-Co, WC 40
GSE16425 Gene expression profiles in human keratinocytes exposure to ultrafine, fine, and submicron TiO2 part... Fujita K, Horie... HaCaT TiO2(T-7), TiO2(T-20), TiO2(T-200) 36
GSE12405 Gene expression of human primary macrophages induced by carbosilane dendrimer 2G-NN16 complexed with... Gras R, Almonac... Primary Macrophages 2G-NN16 carbosilane dendrimer, 2G-NN16 carbosilane dendrimer complexed with a random siRNA 6
GSE39316-HMDM Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... HMDM TiO2, ZnO 30
GSE39316-MDDC Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... MDDC TiO2, ZnO 30
GSE39316-Jurkat Nanotoxicogenomic study of ZnO and TiO2 responses... Tuomela S, Auti... Jurkat TiO2, ZnO 30
E-TABM-679 Transcription profiling of human lung epithelial cells (A549) treated with nano- and micro-sized sil... A549 carbon black, multiwall carbon nano tubes, silica micro, silica nano, silica quartz 36
E-GEOD-7010 Transcription profiling of human primary epithelial cells exposed to coarse, fine and ultrafine part... Huang YC, Karol... primary airway epithelial cells coarse PM (Chapel Hill), fine PM (Chapel Hill), ultrafine PM (Chapel Hill) 12
GSE4567 Endothelial cell culture with Chapel Hill Ultrafine particle... Karoly ED, Li Z... pulmonary artery endothelial cell ultrafine particle (Chapel Hill) 8
GSE8608 Transcription profiling of human monocyte derived macrophages from COPD patients and healthy subject... Eder C, Franken... monocyte-derived macrophages LPS, TiO2 and Printex90 6
GSE20677 Gene Expression in Gold Nanoparticle Oligonucleotide Complexes treated Primary Immune Cells... Kim EY, Schulz ... PBMC AuNP EGFP oligonucleotide complex 16
GSE14452 DNA microarray analyses for HepG2 cells exposed to silver nanoparticles... Kawata K, Osawa... HepG2 Ag2CO3, Ag-NP, Ag-NP + cysteine, PS-NP 15


Please notice that there are three control samples:
- GSM961351:Jurkat_rep4_ctr_24h_0;
- GSM961354:Jurkat_rep5_ctr_24h_0;
- GSM961356:Jurkat_rep6_ctr_24h_0;
that are included in both sample sets: GSE39330-Jurkat_NPs and GSE39330-Jurkat_Dose.
Excluded samplesets information could be find here.